Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 313 / 2e-103 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 291 / 1e-94 Major facilitator superfamily protein (.1) AT2G40460 227 / 6e-70 Major facilitator superfamily protein (.1) AT3G54140 214 / 2e-65 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 211 / 6e-64 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54450 205 / 7e-62 Major facilitator superfamily protein (.1) AT3G53960 193 / 4e-57 Major facilitator superfamily protein (.1) AT1G62200 189 / 2e-55 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 188 / 3e-55 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G37900 186 / 2e-54 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 507 / 7e-179 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 385 / 4e-131 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 366 / 6e-124 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 353 / 6e-119 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 234 / 1e-72 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111800 [exp] 204 / 2e-61 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 201 / 3e-60 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 200 / 5e-60 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 199 / 1e-59 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003614 [exp] 380 / 3e-129 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 380 / 2e-123 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 358 / 2e-120 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 355 / 2e-119 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024933 [exp] 345 / 1e-117 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 348 / 7e-117 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 348 / 1e-116 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 291 / 4e-95 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10035516 [exp] 203 / 4e-61 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10034206 [exp] 200 / 1e-59 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.002G258832.1 pacid=42779447 polypeptide=Potri.002G258832.1.p locus=Potri.002G258832 ID=Potri.002G258832.1.v4.1 annot-version=v4.1 ATGGGTGTGGCAGTTTCCATTATTGTGTTCTTGGTAAGCACTCCATTCTACAGAAACAAATTGCCCCCAGTGAGCCTATTCACCAGGATGGATCAAGTAA TTGTAGCTTCTGTGAGGAAGTGGAAGGTACCCGTCCCAGGTGACCCAAAACAGCTGCATGAGCTTAGCCTGGATGAGTACACAGGATCAGGGAAATTCGG AATTGCCTATACCTCTTCACTTGGATTCCTTGACAAAGCAGCTGTGGAGAGCGGTTCAAGGTCACTGTGGATGCTATTCCCTGTGACCCAAGTTGAAGAA ACCAAGCAAATGATTAAAGTGCTTCCAGTATGGGCTGCTACTTTCATACCTAGCACCATTTTAGCTCAAGTGCACACCCTGTTCATCAAACAGGGAACTG TCTTGGACAGGAGCATGGGACCCCATTTTGAAATCCCTCCAGCGTGCCTCGCAGCTTTTGTAACCATCTCCATGTTGATAAGCCTAGCCATTTATGACCG TTACTTTGTGCTGATGGCTAGGCATTACATGAAAAGACCGAGAGGAACTACATTGCTGCAGAGAATGGGAATTGGGTTTATGTTGCATGTTATTGTAATG ATCACAGCCTGCTTAGCAGAAAGGAAGAGGCTTAGTGTGGCAAGAGAACACAACATAATTAGTAAAAATGAGGTAGTTCCTCTCAGTATATTTATTCTAC TCCCTCAGTTTGTTTTGATGGGAGTTGCTGATAACTTTGTGGAAGCAGCGAAGATAGAGTTTTTCTATGACCAAGCACGAGAAGGAATGAAGAGCCTAGG GAATTCATACATCGCCACCTTCTTGGGAATCGGGAGTTTCCTTAGTAGTTTTCTCCTATCAACAGTTTCTAAAATCACCAAGAAGCATGCATAA
AA sequence Show only first row Show all	>Potri.002G258832.1 pacid=42779447 polypeptide=Potri.002G258832.1.p locus=Potri.002G258832 ID=Potri.002G258832.1.v4.1 annot-version=v4.1 MGVAVSIIVFLVSTPFYRNKLPPVSLFTRMDQVIVASVRKWKVPVPGDPKQLHELSLDEYTGSGKFGIAYTSSLGFLDKAAVESGSRSLWMLFPVTQVEE TKQMIKVLPVWAATFIPSTILAQVHTLFIKQGTVLDRSMGPHFEIPPACLAAFVTISMLISLAIYDRYFVLMARHYMKRPRGTTLLQRMGIGFMLHVIVM ITACLAERKRLSVAREHNIISKNEVVPLSIFILLPQFVLMGVADNFVEAAKIEFFYDQAREGMKSLGNSYIATFLGIGSFLSSFLLSTVSKITKKHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258832 [exp]	0	1
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Potri.006G026002 [exp]	5.91	0.7667
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	12.64	0.7501	PURE.1
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	15.65	0.7189
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.008G216501 [exp]	16.73	0.6655
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.003G076600 [exp]	22.20	0.6797
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.018G125171 [exp]	24.61	0.7259
					Potri.005G130601 [exp]	30.74	0.7119
AT1G73970			unknown protein		Potri.008G016000 [exp]	30.85	0.7239
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127500 [exp]	32.24	0.6479
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	34.72	0.7156

Compare expression of checked genes

Potri.002G258832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.