Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PTR2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 731 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 694 / 0 Major facilitator superfamily protein (.1) AT2G40460 614 / 0 Major facilitator superfamily protein (.1) AT3G54140 524 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 507 / 1e-174 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 495 / 1e-169 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 476 / 4e-162 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 439 / 2e-148 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G54450 431 / 8e-145 Major facilitator superfamily protein (.1) AT3G53960 421 / 1e-140 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258700 [exp] 923 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 830 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 825 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 612 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 519 / 4e-179 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G258832 [exp] 495 / 5e-174 AT5G46050 314 / 1e-103 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.016G111800 [exp] 504 / 2e-173 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 503 / 1e-172 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.006G096800 [exp] 499 / 3e-171 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008232 [exp] 871 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 867 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 829 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 823 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 812 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 796 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 753 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 562 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10024933 [exp] 536 / 0 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 511 / 1e-175 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.002G258900.1 pacid=42779882 polypeptide=Potri.002G258900.1.p locus=Potri.002G258900 ID=Potri.002G258900.1.v4.1 annot-version=v4.1 ATGGCTGAAGTATTAGAAGAGAAAGGTCCAGCAGGTGGGAAGGATGACTACACAGCAGATGGTACTGTCGATCTCAAGGGAAGGCCTGTGTTAAGATCAA AAACTGGGAGATGGAGAGCTTGTTCCTTCATTGTAGGTTATGAAGTTTTTGAGAGGATGGCGTTTTATGGTATATCAGCAAACCTGGTGATATATTTGAC AAAAAAGCTCCATGAAGGCACTGTAGCATCTTCAAACAGTGTCACCAACTGGGCTGGAACAGCATGGATATTGCCCATTCTAGGTGCTTATATCGCAGAT GCTCATCTGGGCCGATTCTGGACTTTCATCATTGCATCAGGCATTTATGTTGCGGGAATGTCTCTGTTAACCCTAGCTGTTTCGGTGCCAGCCCTAAGGC CTCCATCTTGTGGACAAGGTATCAAAGAAGTGGAATGCGACAAAAAAGCCTCAGCTTTGCAGAAGGGTGTTTTCTACGGTGCTTTGTACATAATAGCAGT CGGTACTGGTGGAACCAAGCCTAATATATCCACCATGGGGGCTGATCAATTCGATGATTTTGAACCTAAAGAGAGGACCCAAAAGCTATCATTCTTTAAT TGGTGGATGTTTAGCATTTTCTTTGGCACCTTGTTCTCAAACACCTTCTTGGTTTACATACAAGATAATGTGGGTTGGACCCTTGGCTACGCCCTTCCAA CACTGGGTCTGGCAGTTTCCATTATTGTGTTCTTGGTGGGCACTCCATTCTACAGACACAAATTGCCTGCAGAGAGTCCATTCACCAGGATGGCTCAAGT ACTTGTAGCTGCTGTTAAAAAGTGGAAGGTACCCGTCCCGGATGACCCAAAACAGCTGCATGAGCTTAGCCTGGACGAGTACATAGGATCAGGGAAGTTC AGAATTGACTATACCTCTTCTCTTGGATTCCTTGACAAAGCAGCTGTGGAGAGCGGTTCAAGGTCACCGTGGATGCTATGCCCTGTGACCCAAGTTGAAG AAACCAAGCAAATGATTAAAATGCTTCCAGTCTGGGCTGCTACTTTCATACCTAGCACCATTTTAGCTCAAGTGCACACCCTGTTCATCAAACAGGGAAC TGTCTTGGACAGGAGCATGGGACCCCATTTCGAAATCCCTCCAGCGTGCCTCACGGCTTTTGTAACCATCTCCATGTTGATAAGCCTAGCCATTTATGAC CGTTACTTTGTGCCGATGGCTAGGCATTACACAAAAAGACCGAGAGGAATTACATTGCTGCAGAGAATGGGAATTGGGTTTGTGTTGCATGTTATTGTAA TGATCACAGCCTGCTTAGCAGAAAGGAAGAGGCTTAGCGTGGCGAGAGAACACAACATTATTGGTAAAAATGAGGTAGTTCCTCTCAGTATATTTATTCT ACTCCCTCAGTTTGTTTTGATGGGAGTTGCTGATAACTTTGTGGAAGTAGCAAAGATAGAGTTTTTCTATGACCAATCACCAGAAGGAATGAAGAGCCTA GGGACTTCATACTTCACTAGCAGCTTGGGAATTGGGAATTTCCTTAGTAGTTTTATCCTATCAACAGTTTCTAAAATCACTAAGAAGCATGGCCATAAAG GGTGGATTTTGGACAATCTAAATCTCTCTCATTTAGACTACTATTATGCTGTCCTGGCCATATTGAGCTTCCTCAACTTCCTTCTCTATTTAGTTGCTGC AAACTTCTTTGTTTATAACGTGGACGTAGATTCCAAGAGTGATTTGCAGGGGAAAAAAAAGGAAGCTTCACTAGTCGAAGCTCATCAAGACAACGAAAAC TTGAAGGTTGGATAA
AA sequence Show only first row Show all	>Potri.002G258900.1 pacid=42779882 polypeptide=Potri.002G258900.1.p locus=Potri.002G258900 ID=Potri.002G258900.1.v4.1 annot-version=v4.1 MAEVLEEKGPAGGKDDYTADGTVDLKGRPVLRSKTGRWRACSFIVGYEVFERMAFYGISANLVIYLTKKLHEGTVASSNSVTNWAGTAWILPILGAYIAD AHLGRFWTFIIASGIYVAGMSLLTLAVSVPALRPPSCGQGIKEVECDKKASALQKGVFYGALYIIAVGTGGTKPNISTMGADQFDDFEPKERTQKLSFFN WWMFSIFFGTLFSNTFLVYIQDNVGWTLGYALPTLGLAVSIIVFLVGTPFYRHKLPAESPFTRMAQVLVAAVKKWKVPVPDDPKQLHELSLDEYIGSGKF RIDYTSSLGFLDKAAVESGSRSPWMLCPVTQVEETKQMIKMLPVWAATFIPSTILAQVHTLFIKQGTVLDRSMGPHFEIPPACLTAFVTISMLISLAIYD RYFVPMARHYTKRPRGITLLQRMGIGFVLHVIVMITACLAERKRLSVAREHNIIGKNEVVPLSIFILLPQFVLMGVADNFVEVAKIEFFYDQSPEGMKSL GTSYFTSSLGIGNFLSSFILSTVSKITKKHGHKGWILDNLNLSHLDYYYAVLAILSFLNFLLYLVAANFFVYNVDVDSKSDLQGKKKEASLVEAHQDNEN LKVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258900 [exp]	0	1	PTR2.2
AT5G36930			Disease resistance protein (TI...		Potri.019G052000 [exp]	12.00	0.8030
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015300 [exp]	18.11	0.7904
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009300 [exp]	22.84	0.7233
					Potri.010G134800 [exp]	46.54	0.7291
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	49.79	0.7329
AT1G80380			P-loop containing nucleoside t...		Potri.001G177300 [exp]	53.37	0.7359
AT1G13050			unknown protein		Potri.008G184500 [exp]	71.59	0.7281
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048066 [exp]	89.77	0.6774
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	89.95	0.7162
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038500 [exp]	97.36	0.6502

Compare expression of checked genes

Potri.002G258900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.