Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04020 472 / 3e-156 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2) AT4G21070 312 / 3e-93 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G15120 67 / 7e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358100 [exp] 343 / 5e-104 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.011G141400 [exp] 88 / 2e-17 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G197400 [exp] 53 / 9e-07 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.014G122400 [exp] 51 / 4e-06 AT4G02110 382 / 4e-112 transcription coactivators (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022895 [exp] 665 / 0 AT1G04020 421 / 2e-137 breast cancer associated RING 1 (.1.2) Lus10024930 [exp] 375 / 4e-121 AT1G04020 201 / 3e-56 breast cancer associated RING 1 (.1.2) Lus10036151 [exp] 319 / 4e-96 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10017935 [exp] 93 / 6e-19 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013677 [exp] 91 / 2e-18 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001455 [exp] 50 / 7e-06 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10011027 [exp] 47 / 5e-05 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10000996 [exp] 47 / 7e-05 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10025038 [exp] 44 / 0.0007 AT4G02110 368 / 1e-109 transcription coactivators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF13771 [poplar] [flax] zf-HC5HC2H PHD-like zinc-binding domain CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G259000.2 pacid=42778567 polypeptide=Potri.002G259000.2.p locus=Potri.002G259000 ID=Potri.002G259000.2.v4.1 annot-version=v4.1 ATGGCACCACCTCTGCCGCCAATAACCATCTCAAAAATCGAAAAGTTCTTCCCTTACCGCCAACACAAAACGAGACTAGATCCCAGCCGTCCACGTGCAC TCCTTTCCCTTCCATCAATCACCATCCCCTATAAACCTCCTCCTCCTCCTTTGCCACTCGGCTCCCACCCCTTCAAAGCAGAGAAAAAAATGGCGGGCTC AGTGAAACAGAGCGTTAGCTCTATGAACCCATGGGTTCTTCATCTCCAGAAATTGGGTCTCGAGCTCAAATGCCCTCTCTGCTTGGAATTGTTGAAGCGA CCCTTTTTGCTACCTTGTGATCACATTTTCTGCAATTCATGTTTGCCCAAAACAATACAGTTTGGATCCGAGTGTCCTCTCTGTAAAGCTCAATATGGCG ACTCAGATTTGAGGTGTTTGCCTTTGGTTGAAAACATGGTGACAATCTATAGAAGCTTGGATGCAGCTTTCAGTGCCAGTATTTTGCAGTCTCGTTCTGA GACTGGTGGGGTTTTGAAGCAGTGTCCGGCTTCGAAGAGTAGTGATAGTAAGGATAATAAATTAGTGGAAGCTCACTGGGGGAATAATTCTAGTAGTGGA CAATCTAAATTAATGTGCAATGATGTAGCTTGTGCTCCATCGAATTGTTCAGTTGGAAAAGGGGTTCGAAAGAATGTAGCGATGGGTAATTGCAATGTGC CAATGCATGTCAAGGATAAAGAGTATGGGGTGATTGGTAGTGTAGGGGGTGCGTCTAATGATAAACAGAATGCCAATTCTCCACCGGTAGGCTCGCAGGT AAGAGCTAGGGGGCTACATGAATCCAAGGCTTTTCAAATGGACTTGAATCAGGCAGATCAGTTGTCGCCTAGAAGTCCTCCTTCATTTGGTGATAATAAG GATTCAGAAAACGACAGTAATGATCAGGGAGGTGATGATAGTCTACAAAATTATAAAGCAGAAAACTTGGTTCAACTAAATTCTGACAACAAAAGAAGAC AAGAGAGGCATAGCACTTCTGCTTCTGAAACCGAGGAAGGTCATTTGAGGGATTCAAAGAGACATAAGAAGTTGAACTACAGTCCATCGGATCTGGGTGC AAATAATATTGGTCATATCAAACCAAATGCACCTCCAACTGAAAATTTGATAACCAGTTCTCAATTAGAGATTCCTGCAAATTTGAATAACTCGTTTAAT GATTGTGGATTCTGCCACTCCTCCAGAATCACAGCGGATACTGGTCCAATGTTGCATTTTGCAAATGGAAAGCCAGTAGAGGGAGTTGAAGCAACTCTAT CCGACACTATACATGTGCATGCTGTGTGTATTGAATGGGCACCGCAAGTCTATTTTGTTGGTGAAACTGTTAAGAATCTGAAGGCAGAACTGGCCAGGGG TGCAAAGCTTAAGTGCAGCAAATGTGGGCTGAAGGGAGCAGCTTTAGGCTGCTATCTAAAATCATGCAAGAGAAGTTATCATGCTCCCTGTGCAATGGAA ATTACTAAATGTCGATGGGATTATGAAAACTTCCTTGTGCTTTGCTCTGCTCATTCTTCAGTAAAATTTCCAAGTGAGAAGTCCAAGGCTAAGAAACACA ACCAGAAAACTTCTTCTGTGCTGACTTCAGTCGCCCCACAACAGTCTAACTTTTGGGTGGGATCATGTAATGGAGCAAAGAAATGGGTTTTCTGTGGATC TGCTCTGTCTTCTGAGGAAAAGTGTCTTTTGGTGAAGTTTGGAAGCATGATTGGTGTGCCAGTGAACAAATTCTGGGCATCAAATGTCACACATGTGATT GCAGCCACAGATTCAGATGGGGCATGCACCAGGACGCTGAAATATCTTATGGCCATTTTGAATGGGAAATGGGTTCTTACAATAGATTGGATAAAGGCTT GCATGGAATCTATGCATCCTGTGGATGAAGAAAATTATGAAATTATTCTTGACTGCCATGGAAGCCGTGATGGCCCAAAAAATGGCAGGCTTAGTGCACT AAATAATGCACCGAAACTTTTCAGTGGCTTAAGTTTCTGTTTTGTTGGAGATTTTGTGGCTGGCTACAAAGAAGGTCTCCAGAGTCTGGTTATTGCGGCA GGAGGTACACTTTTGAAGAGCGAGGAAGAATTGGTGGAACAAAGACATGAGCCGTTATCTCCTTCAACAACACTAATTGTTTATAACCTTGATCCCCCAC AAGGGTGCAAATTAGGAGAGGAAGTTTCAATTATCTGGCAGAGAACCAATGAAGCACAGGATTTAGCTGCTAAAGTTGGATCCCAAGTCATTGGTCACAC ATGGTTGTTGGAGTCTATCTCCTCATACAAGTTACAGCCTTTTGTAAACTGGGACAGCATCATCAATTCTGATAGCTAG
AA sequence Show only first row Show all	>Potri.002G259000.2 pacid=42778567 polypeptide=Potri.002G259000.2.p locus=Potri.002G259000 ID=Potri.002G259000.2.v4.1 annot-version=v4.1 MAPPLPPITISKIEKFFPYRQHKTRLDPSRPRALLSLPSITIPYKPPPPPLPLGSHPFKAEKKMAGSVKQSVSSMNPWVLHLQKLGLELKCPLCLELLKR PFLLPCDHIFCNSCLPKTIQFGSECPLCKAQYGDSDLRCLPLVENMVTIYRSLDAAFSASILQSRSETGGVLKQCPASKSSDSKDNKLVEAHWGNNSSSG QSKLMCNDVACAPSNCSVGKGVRKNVAMGNCNVPMHVKDKEYGVIGSVGGASNDKQNANSPPVGSQVRARGLHESKAFQMDLNQADQLSPRSPPSFGDNK DSENDSNDQGGDDSLQNYKAENLVQLNSDNKRRQERHSTSASETEEGHLRDSKRHKKLNYSPSDLGANNIGHIKPNAPPTENLITSSQLEIPANLNNSFN DCGFCHSSRITADTGPMLHFANGKPVEGVEATLSDTIHVHAVCIEWAPQVYFVGETVKNLKAELARGAKLKCSKCGLKGAALGCYLKSCKRSYHAPCAME ITKCRWDYENFLVLCSAHSSVKFPSEKSKAKKHNQKTSSVLTSVAPQQSNFWVGSCNGAKKWVFCGSALSSEEKCLLVKFGSMIGVPVNKFWASNVTHVI AATDSDGACTRTLKYLMAILNGKWVLTIDWIKACMESMHPVDEENYEIILDCHGSRDGPKNGRLSALNNAPKLFSGLSFCFVGDFVAGYKEGLQSLVIAA GGTLLKSEEELVEQRHEPLSPSTTLIVYNLDPPQGCKLGEEVSIIWQRTNEAQDLAAKVGSQVIGHTWLLESISSYKLQPFVNWDSIINSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	0	1
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	4.00	0.7759
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.011G139100 [exp]	4.24	0.7576
AT5G59970			Histone superfamily protein (....		Potri.005G115300 [exp]	5.47	0.7545	HFO911
AT3G02020		AK3	aspartate kinase 3 (.1)		Potri.002G236800 [exp]	5.74	0.6907
AT5G59970			Histone superfamily protein (....		Potri.005G115601 [exp]	9.53	0.8073
AT2G46230			PIN domain-like family protein...		Potri.014G092600 [exp]	9.79	0.7224
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	9.94	0.7103
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	11.95	0.6815
AT5G49110			unknown protein		Potri.010G011800 [exp]	18.65	0.7564
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	22.80	0.7041

Compare expression of checked genes

Potri.002G259000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.