Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 184 / 3e-58 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 178 / 5e-56 Immunoglobulin E-set superfamily protein (.1) AT1G12070 177 / 1e-55 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234600 [exp] 196 / 7e-63 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 191 / 1e-60 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.006G010500 [exp] 189 / 7e-60 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 184 / 5e-58 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 175 / 2e-54 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003794 [exp] 188 / 5e-60 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 184 / 5e-58 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 183 / 1e-57 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 182 / 2e-57 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 182 / 2e-57 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 180 / 8e-57 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 176 / 3e-55 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 170 / 6e-52 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003616 [exp] 47 / 8e-07 ND 38 / 7e-04
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF02115 [poplar] [flax] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.002G259200.1 pacid=42777351 polypeptide=Potri.002G259200.1.p locus=Potri.002G259200 ID=Potri.002G259200.1.v4.1 annot-version=v4.1 ATGGAAAGTGGCAAGAAGGCAGAAGCAGGCCCATCAACAACAACAAGAGGTGGTTTTGATGAGAAACTAGAAAGGAAAAGGGAAACCAGTGAAACCCCAC CTGCTGTAGCTGCTGCTATCGATGATGATGAGGAGGATGATGGTGATGCTGTTGATAATGGAGTTCCTGTTGCTGGATTTGTTCCTGGGCCTTTGCTATC TCTCAAGGAACAGATTGAGAAAGACAAGGAAGATGATAGCTTGAGGAGGTGGAAAGAGAAGCTACTTGGCTGCGTTGAAAGTGATTTGAATGGCCAACTG GAACCTGAAGTCAAATTCCACTCGATAGGAATTATATCTGATGACATTGGGGAAATAAACACTCCCTTGCCTGTTGATGAAAGTCAGAGTGGTCATCCCC TTTTCGCTCTCAGGGAAGGATCTCGATACCAGCTTAAGCTAACATTCAGTGTTCTGCACAATATTGTTTCTGGCCTTGCATACTCAAATACAGTGTGGAA GGGGGGGATACAAGTTGATCAAAGCAAAGGAATGCTGGGTACTTTTGCTCCTCAGCGGGAACCATATGTCCATACTTTGGAGGAGGACACAACTCCATCT GGTGTGCTAGCAAGGGGAACTTATTCTGCAAAGCTTAAGTTCGAAGACGATGACAGAAGATGCCATATGGAGCTCAAATATTCCTTTGAGATTAAGAAGA GACGCTAG
AA sequence Show only first row Show all	>Potri.002G259200.1 pacid=42777351 polypeptide=Potri.002G259200.1.p locus=Potri.002G259200 ID=Potri.002G259200.1.v4.1 annot-version=v4.1 MESGKKAEAGPSTTTRGGFDEKLERKRETSETPPAVAAAIDDDEEDDGDAVDNGVPVAGFVPGPLLSLKEQIEKDKEDDSLRRWKEKLLGCVESDLNGQL EPEVKFHSIGIISDDIGEINTPLPVDESQSGHPLFALREGSRYQLKLTFSVLHNIVSGLAYSNTVWKGGIQVDQSKGMLGTFAPQREPYVHTLEEDTTPS GVLARGTYSAKLKFEDDDRRCHMELKYSFEIKKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G259200 [exp]	0	1
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Potri.013G017500 [exp]	4.89	0.8586
AT2G23090			Uncharacterised protein family...		Potri.014G018100 [exp]	5.00	0.8713
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032900 [exp]	5.74	0.8598
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	5.83	0.8817	Pt-ARF1.7
AT4G39630			unknown protein		Potri.005G082500 [exp]	7.48	0.8728
AT5G13260			unknown protein		Potri.003G164100 [exp]	7.81	0.8838
AT2G38430			unknown protein		Potri.019G030200 [exp]	8.71	0.8370
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	10.39	0.8380
AT3G17380			TRAF-like family protein (.1)		Potri.017G049100 [exp]	12.00	0.8774
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.004G133500 [exp]	12.72	0.8644	Pt-CDC2.1,1

Compare expression of checked genes

Potri.002G259200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.