Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04000 87 / 2e-22 unknown protein AT5G44060 78 / 5e-19 unknown protein AT3G23440 44 / 3e-06 EDA6, MEE37 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068800 [exp] 65 / 4e-14 AT3G23440 94 / 5e-26 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003619 [exp] 80 / 8e-20 AT5G44060 100 / 2e-27 unknown protein Lus10008237 [exp] 77 / 2e-18 AT1G04000 79 / 2e-19 unknown protein Lus10011797 [exp] 58 / 2e-11 AT5G44060 85 / 1e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G259400.1 pacid=42777016 polypeptide=Potri.002G259400.1.p locus=Potri.002G259400 ID=Potri.002G259400.1.v4.1 annot-version=v4.1 ATGAATACAAAAACGATGCGTCTTCCACCACGTCGCGTTTTGACGCCAAGCAAGCGCAAAGAGAGAGAGGGCCCTGATACTCTCAAACCGTCAACACCCA CAAAATTAACCAAGCCGGCTTCGCCCCGAGCCAGCTCCGAAAAAGGCTTGGACTCGGCCTCCTCTAACCAGCTCCTGGCCGGCTATTTAGCTCACGAGTA CCTCACCAAGGGTACCCTCTTCGGTCAACCTTGGGAACCGGCTCGAGCAGAGTCCGTGCCAGTCTCGGGTGTGGACTCAGTCGGGGTCGTCAAGCCGGCC CGTAAAGCCGAGTCCGAGCCGAATAAAGATAATTATGAGAGGTACGTGGAGGTATCACGTTTGTTGAAGATAGGTGGGCCCAACATACCAGATATTATCA ACCCTACCCAGCTCGCACGGTTCCTCCAGATGTAA
AA sequence Show only first row Show all	>Potri.002G259400.1 pacid=42777016 polypeptide=Potri.002G259400.1.p locus=Potri.002G259400 ID=Potri.002G259400.1.v4.1 annot-version=v4.1 MNTKTMRLPPRRVLTPSKRKEREGPDTLKPSTPTKLTKPASPRASSEKGLDSASSNQLLAGYLAHEYLTKGTLFGQPWEPARAESVPVSGVDSVGVVKPA RKAESEPNKDNYERYVEVSRLLKIGGPNIPDIINPTQLARFLQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04000			unknown protein		Potri.002G259400 [exp]	0	1
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	9.64	0.7897
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	12.96	0.8114
					Potri.014G090000 [exp]	13.52	0.8376
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.012G082900 [exp]	15.29	0.8261
AT1G12170			F-box family protein (.1)		Potri.012G014700 [exp]	17.83	0.8351
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	40.60	0.7950
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.009G088900 [exp]	46.00	0.7814	VSR.1
AT3G47530			Pentatricopeptide repeat (PPR)...		Potri.003G074500 [exp]	102.99	0.7851
AT1G67330			Protein of unknown function (D...		Potri.003G172300 [exp]	118.78	0.7666
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.001G215800 [exp]	144.94	0.7498

Compare expression of checked genes

Potri.002G259400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.