Plant FIBer expression Database

Potri.002G259600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20420 740 / 0 ATP citrate lyase (ACL) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G195700
[exp]
788 / 0 AT2G20420 745 / 0.0 ATP citrate lyase (ACL) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008238
[exp]
761 / 0 AT2G20420 766 / 0.0 ATP citrate lyase (ACL) family protein (.1)
Lus10003620
[exp]
759 / 0 AT2G20420 763 / 0.0 ATP citrate lyase (ACL) family protein (.1)
Lus10022902
[exp]
198 / 6e-63 AT2G20420 196 / 8e-63 ATP citrate lyase (ACL) family protein (.1)
Lus10024923
[exp]
180 / 5e-56 AT2G20420 176 / 3e-55 ATP citrate lyase (ACL) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0506 Succ_CoA_synth PF00549 Ligase_CoA CoA-ligase
CL0179 ATP-grasp PF08442 ATP-grasp_2 ATP-grasp domain
Representative CDS sequence
>Potri.002G259600.4 pacid=42780126 polypeptide=Potri.002G259600.4.p locus=Potri.002G259600 ID=Potri.002G259600.4.v4.1 annot-version=v4.1
ATGAGAGGATTCTTAAACAAGCTCGTTTCTCGCTCTCTCTCCGTCGCCGGCAAATGGCAACACCAACAACTCCGCCGCCTCAACATCCACGAATATCAGG
GAGCTGGGTTGATGGGGAAATATGGGATCAATGTGCCAAAAGGTGTAGCTGTTGCTTCCCTTCATCATGTTCAAAAGGCTCTTCAATATGTATTTCCTAG
CGAAAGCGAGTTGGTGGTTAAGAGCCAGGTTTTGGCTGGTGGGCGAGGATTAGGAAAGTTTAAGAATGGTTTTCAGGGTGGTGTTCACATTGTTAAGACT
GACAAGGTTGAAGAAACTGCTGGAAAGATGCTTGGCCAGATCCTTGTTACTAAACAAACTGGTTCTCAAGGCAAAATTGTTAGCAAGGTTTACTTGTGTG
AAAAGTTATCACTGGTCAATGAGATGTACTTTGCTATCATGCTGGATCGGACAACTGCTGGTCCACTTATCATAGCTTGTAAAAAGGGGGGAACCAGCAT
TGAAGACCTTGCTGAGAAATTTCCTGACTTGATTATTAAGGTACCCATTGATGTATTTAAAGGAATTACTGATGAAGATGCTGTAAAAGTTGTTGATGGC
CTGGCTCCAAAGGTTGCTGATAGAAATGATTCGATTGAGCAAGTGAAGAAATTATATAAACTCTTTTGCGAGAGTGATTGCACATTGTTGGAAATCAATC
CCATTGCAGAGACTTCTGATAAGCAATTGGTAGCTGCTGATGCTAAATTGAATTTTGATGATAATGCTGCTTTTCGTCAAAAGGAGATATTTGCTCTCAG
AGATCCAACACAGGAAGATCCAAGAGAGGTGGCTGCTGCCAAGGCAGATCTAAATTATATTGGTTTGGATGGGGAAATTGGTTGCATGGTGAATGGTGCA
GGATTAGCAATGGCTACAATGGATATTATTAAACTGCACGGAGGCACTCCTGCAAATTTTCTTGATGTGGGTGGTAATGCTTCTGAAGAACAGGTGGTTG
AAGCATTTAAGATACTGACTTCTGATGACAAAGTAAAGGCAATTTTGGTGAATATATTTGGAGGAATAATGAAATGCGATGTGATAGCAAGCGGAATTGT
CAACGCCGCCAAACAGGTCGCTCTAAAAGTTCCAGTTGTTGTGCGTCTCGAAGGCACTAATGTTGACCAAGGAAAGAGAATTCTGAAGGAGAGTGGAATG
GCACTAATCACAGCAGAAGATTTGGATGATGCTGCAGAGAAAGCAGTAAAAGCATCAGCTAGTTGA
AA sequence
>Potri.002G259600.4 pacid=42780126 polypeptide=Potri.002G259600.4.p locus=Potri.002G259600 ID=Potri.002G259600.4.v4.1 annot-version=v4.1
MRGFLNKLVSRSLSVAGKWQHQQLRRLNIHEYQGAGLMGKYGINVPKGVAVASLHHVQKALQYVFPSESELVVKSQVLAGGRGLGKFKNGFQGGVHIVKT
DKVEETAGKMLGQILVTKQTGSQGKIVSKVYLCEKLSLVNEMYFAIMLDRTTAGPLIIACKKGGTSIEDLAEKFPDLIIKVPIDVFKGITDEDAVKVVDG
LAPKVADRNDSIEQVKKLYKLFCESDCTLLEINPIAETSDKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGA
GLAMATMDIIKLHGGTPANFLDVGGNASEEQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQGKRILKESGM
ALITAEDLDDAAEKAVKASAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20420 ATP citrate lyase (ACL) family... Potri.002G259600
[exp]
0 1
AT5G43330 c-NAD-MDH2 cytosolic-NAD-dependent malate... Potri.010G071000
[exp]
3.00 0.9547
AT3G52590 HAP4, ERD16, UB... HAPLESS 4, EARLY-RESPONSIVE TO... Potri.016G077000
[exp]
3.46 0.9543 UBQ1.1
AT3G02090 MPPBETA Insulinase (Peptidase family M... Potri.017G092400
[exp]
3.46 0.9371
AT1G62440 LRX2 leucine-rich repeat/extensin 2... Potri.006G081200
[exp]
5.47 0.9316
AT5G37510 CI76, EMB1467 embryo defective 1467, NADH-ub... Potri.017G136950
[exp]
6.00 0.9276
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.005G127000
[exp]
6.24 0.9274
AT5G60390 GTP binding Elongation factor ... Potri.008G042700
[exp]
7.74 0.9413 Pt-ADR12.2
AT1G30300 Metallo-hydrolase/oxidoreducta... Potri.011G081600
[exp]
8.77 0.9342
AT3G27080 TOM20-3 translocase of outer membrane ... Potri.003G173400
[exp]
9.74 0.9396 Pt-TOM20.2
AT3G15020 mMDH2 mitochondrial malate dehydroge... Potri.001G376500
[exp]
10.95 0.9255

Potri.002G259600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.