Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03990 300 / 9e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 288 / 1e-88 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 212 / 3e-60 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 175 / 4e-47 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 350 / 6e-112 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 342 / 9e-109 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 172 / 1e-45 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008239 [exp] 366 / 4e-118 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 360 / 1e-115 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 233 / 6e-68 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 233 / 1e-67 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 163 / 8e-43 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 159 / 1e-41 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 114 / 3e-27 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10011801 [exp] 107 / 2e-25 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 0 / 1 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00890 [poplar] [flax] FAD_binding_2 FAD binding domain CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.002G259700.1 pacid=42777010 polypeptide=Potri.002G259700.1.p locus=Potri.002G259700 ID=Potri.002G259700.1.v4.1 annot-version=v4.1 ATGGAGCAAAATCAGAACTGCCATCCACTATTAAGAGGAGGGAACAGGAAAGTACTAAGCAATGCATATGGTCATGGATTCTCTTCAGGACAGATGCAAT CATTAGATGCCTTTTGTGAAACTCTCATTCCTCCATTGCCTGTACCCAGCTTTAGCGAGGAAATCCCTGTTGATAAGCAGGAGGCTATTCGTTCTTTCTA CAAAGCTTCTGGGTCTCAGTCTCCCGTAGCAGAGTTGATGGTAAAAAGCGGGGTGCCAGAAGCAGTGCTCTTCGTGAGATTGGTTTTGAAGTTTCTGTCT TGCAGATTGGGTACACTTCTGCTTTGTGGGTTCATCTGTTTGGATTGGAAATGGCCATTGATTCACAAGTTCTCTGAAATTTCTGCGGAGAGGAGAGAAG AAATTCTTAGGAAATGGTCAAGGCAACAGTACCTGACACCATTAAGAGTGGTTTTTGTGGTGATCAAACTCATGTGCATGTATACTGATGACATCGGAAA ACAAAGCATGGGAAGCAATTGGATATCAAGCCTCCAAGTCATGGAAGATCCGGAACACAACACCTGCAAGGTCAAATGTGATGTTGTGGTTGTTGGATCC GGTTGCGGTGGAGGGATTGCAGCTTCAGCCCTCGCAAGCTCAGGCAAGAAAGTACTTGTCCTAGATAAAGGGAACTATTCCGTGCCAGAAGATTACTCTT CACTTGAAGGGCCTTCCATGTCTGAGCTATACGAGTCTGGTGGATTTCTATCAGCTGTCGACGGGGAAACTATGATTTTGGCCGGATCAACAGTGGGTGG AGGTTCTGCTGTAAACTGGTCTGCATGCATAAAGACACCTGATTCTGTTCTCGGAGAATGGTCTGTTGATCACATGATTCCACTATATGGGAGTCCTGAA TATCAATATGCCATGGATGCAGTGTGCAAGAGGATTGGTGTTACAGAGCATTGCGCCGAGAAAGGATTTCAAAATCAAATTCTTCGGAGAGGATGTCAGA AACTTGGTTTGAAAGTTGGATTTGTGCCAAGGAATTGTACGGAGGATCATTATTGTGGTTCTTGCTGCTATGAGTGTAGAACAGGAGAGAAGAAAGGGAC CGATTCCACATGGCGCTACCCCCCCGTCCGGGGACACTTTCCAGAGCATATATCTTGTCTCGAAGGAAAAGTATCCGAGGGAGGAATTGTCACTTCCATG CACAAGGCAGTCTCAGCAGAGCCCAAACACACTAGCATTTTAGAAACTCCATCTATTGGACCAGCCTCGTTTGCAGCAGCATGTCCATGGACTTCAGGGC TGGACTTCATGGATAGGATGGCTTTGAGGAAGGCTTTGCGAATTTTGATTGCAGCTGGAGCTGTGAAAGTGGGCACTTACCGAAGTGATGGCCAAAGACT AGTCTGTGAAGGTATTAAGAAGGATTTGGAAGAGTTCTTGGACACAATCAGAATACCTGGAGGGCTGAGGTCAAGAGAAGAGAATTGGACCATATTATTT TCTGCACATCAGATGGGTAGCTGTACGGTGGGTGCCACGGCCGAAGAAGGTGGAGTTGATCAAAATGGGGAAAGCTGGGCGGCAGAAAACTTATTTGTAT GTGATAGAAGTGTACTGCCAAGTGCATTGGGGTCAATCCCATGA
AA sequence Show only first row Show all	>Potri.002G259700.1 pacid=42777010 polypeptide=Potri.002G259700.1.p locus=Potri.002G259700 ID=Potri.002G259700.1.v4.1 annot-version=v4.1 MEQNQNCHPLLRGGNRKVLSNAYGHGFSSGQMQSLDAFCETLIPPLPVPSFSEEIPVDKQEAIRSFYKASGSQSPVAELMVKSGVPEAVLFVRLVLKFLS CRLGTLLLCGFICLDWKWPLIHKFSEISAERREEILRKWSRQQYLTPLRVVFVVIKLMCMYTDDIGKQSMGSNWISSLQVMEDPEHNTCKVKCDVVVVGS GCGGGIAASALASSGKKVLVLDKGNYSVPEDYSSLEGPSMSELYESGGFLSAVDGETMILAGSTVGGGSAVNWSACIKTPDSVLGEWSVDHMIPLYGSPE YQYAMDAVCKRIGVTEHCAEKGFQNQILRRGCQKLGLKVGFVPRNCTEDHYCGSCCYECRTGEKKGTDSTWRYPPVRGHFPEHISCLEGKVSEGGIVTSM HKAVSAEPKHTSILETPSIGPASFAAACPWTSGLDFMDRMALRKALRILIAAGAVKVGTYRSDGQRLVCEGIKKDLEEFLDTIRIPGGLRSREENWTILF SAHQMGSCTVGATAEEGGVDQNGESWAAENLFVCDRSVLPSALGSIP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	0	1
					Potri.001G000450 [exp]	1.41	0.7726
AT5G61120			unknown protein		Potri.014G040100 [exp]	3.00	0.7037
AT5G49525			unknown protein		Potri.013G007500 [exp]	3.16	0.7630
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.006G102400 [exp]	16.49	0.7360
AT3G25570			Adenosylmethionine decarboxyla...		Potri.010G133900 [exp]	17.83	0.6372	SAMDC.2
					Potri.001G121650 [exp]	18.54	0.6187
					Potri.001G054850 [exp]	21.16	0.7059
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.006G064100 [exp]	25.09	0.6497
AT1G76770			HSP20-like chaperones superfam...		Potri.002G067700 [exp]	25.45	0.7549
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	26.94	0.6733

Compare expression of checked genes

Potri.002G259700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.