Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75220 744 / 0 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 737 / 0 Major facilitator superfamily protein (.1) AT2G48020 391 / 3e-132 Major facilitator superfamily protein (.1.2) AT5G18840 379 / 2e-127 Major facilitator superfamily protein (.1) AT1G54730 366 / 1e-122 Major facilitator superfamily protein (.1.2.3) AT3G05150 365 / 4e-122 Major facilitator superfamily protein (.1) AT1G08930 363 / 7e-121 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05400 347 / 3e-115 Major facilitator superfamily protein (.1.2) AT5G27360 346 / 2e-114 SFP2 Major facilitator superfamily protein (.1) AT1G08920 344 / 4e-114 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024300 [exp] 736 / 0 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 406 / 5e-138 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 402 / 3e-136 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 392 / 2e-132 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 390 / 1e-131 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 374 / 1e-125 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 350 / 6e-116 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 343 / 2e-113 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 342 / 7e-113 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001656 [exp] 696 / 0 AT1G75220 707 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10002534 [exp] 692 / 0 AT1G75220 711 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10028303 [exp] 665 / 0 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10041748 [exp] 658 / 0 AT1G75220 697 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10008183 [exp] 394 / 2e-133 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 391 / 3e-132 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 388 / 2e-131 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 390 / 3e-128 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 375 / 9e-126 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 375 / 1e-125 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G259900.5 pacid=42778478 polypeptide=Potri.002G259900.5.p locus=Potri.002G259900 ID=Potri.002G259900.5.v4.1 annot-version=v4.1 ATGAGTTTCAGGGATGACAGTGAGGATGGAAGGGGAGATATACGGAAACCATTTTTACACACAGGGAGTTGGTACCGTATGAGCTCAAGACAATCTAGCA TGATGGGCTCTTCTCAGGCCATTCGTGATAACTCTATCTCTGTCGTTGCTTGCGTCTTGATTGTCGCTTTGGGCCCCATCCAATTCGGTTTCACCTCTGG TTACTCTTCACCAACTCAAGCTTCAATAATGGCGGATCTTGGACTCACAGTATCCGAGTTCTCTTTATTTGGTTCACTGTCAAATGTGGGTGCTATGGTT GGTGCTATAGCCAGTGGTCAAATTGCGGAGTATATTGGACGAAAAGGGTCTTTAATGATTGCTGCTATTCCTAATATTATTGGATGGCTAGCTATATCTT TTGCCAAAGATTCTTCATTTCTATATATGGGAAGGTTATTGGAAGGTTTTGGTGTGGGAATTATCTCTTACACGGTGCCTGTGTACATAGCAGAGATAGC ACCTCAAAACTTGAGAGGGGCGTTGGGTTCGGTGAATCAGCTCTCTGTGACGATTGGAATCATGCTTGCTTATCTGCTTGGATTGTTTGTTGAATGGAGA ATACTTGCTGTTTTGGGGATATTGCCATGTACAATTTTGATACCAGGCCTGTTCTTCATTCCAGAATCTCCTCGTTGGCTGGCTAAAATGGGCATGACAG AAGATTTTGAATCTTCGTTGCAAGTTCTTCGGGGTTTTGATACTGATATTTCTGTTGAAGTGCATGAAATCAAGAGAGCTATAGCATCAACAAGTAGAAG GACTACAATCCGATTTGCAGAGCTCAAGCGTAAACGATATTGGTTCCCTTTAACGGTTGGAATTGGATTACTTGTCCTGCAGCAGCTTAGTGGAATTAAT GGCGTTCTATTCTATTCGAGTAACATTTTTGCAACTGCTGGGATTAAAAGTAGCAATGTGGCTACAGTTGGGGTTGGTGCCATTCAGGTGATTGCAACTG GAGTTACAACATGGTTGGTAGATAGAACAGGTCGCCGGCTTCTGCTTATAGTCTCCACTTCTGGGATGACTATCAGTCTCCTAATTGTTGCTGTATCGTT TTTTGTGAAGGGGTTTGTGCCGGAAGACTCTAGTTTGTATAGCATATTGGGGATCTTGTCAGTAGTTGGAGTTGTGGCCATGGTAGTTACCTTCTCTTTG GGAATGGGAGCCATCCCGTGGGTAATAATGTCGGAGATTCTTCCGGTCAACATTAAGAGCCTTGCTGGAAGTGTAGCAACACTAGCCAACTGGCTGATCT CCTTTTTGGTCACAATGACTGCAAATTTGCTCTTGGATTGGAGTACCGGAGGAACTTTTATCATTTACTCGGTTGTGAGTGCTTTTGCTGTGGTATTTGT GAGTATGTGGGTTCCTGAGACGAAAGGAAGAACATTGGAGGAAATTCAAAGCTCCTTCAGATGA
AA sequence Show only first row Show all	>Potri.002G259900.5 pacid=42778478 polypeptide=Potri.002G259900.5.p locus=Potri.002G259900 ID=Potri.002G259900.5.v4.1 annot-version=v4.1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSSQAIRDNSISVVACVLIVALGPIQFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMV GAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVNQLSVTIGIMLAYLLGLFVEWR ILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGIN GVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTWLVDRTGRRLLLIVSTSGMTISLLIVAVSFFVKGFVPEDSSLYSILGILSVVGVVAMVVTFSL GMGAIPWVIMSEILPVNIKSLAGSVATLANWLISFLVTMTANLLLDWSTGGTFIIYSVVSAFAVVFVSMWVPETKGRTLEEIQSSFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	0	1
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.006G226100 [exp]	1.73	0.8810
AT3G03620			MATE efflux family protein (.1...		Potri.013G069400 [exp]	2.23	0.8671
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.019G040400 [exp]	5.65	0.8204
AT1G79710			Major facilitator superfamily ...		Potri.001G041600 [exp]	6.00	0.8535
AT3G14840			Leucine-rich repeat transmembr...		Potri.003G026150 [exp]	8.66	0.8107
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	9.59	0.8676
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	10.29	0.8794
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	10.72	0.8123	FIE.1,PGE901
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	12.72	0.8729
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	13.03	0.8346

Compare expression of checked genes

Potri.002G259900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.