Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 710 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 652 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G24240 221 / 2e-59 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G55610 215 / 1e-57 BRL1 BRI1 like (.1.2) AT1G34110 214 / 2e-57 Leucine-rich receptor-like protein kinase family protein (.1) AT2G24230 200 / 3e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G28440 200 / 5e-53 HSL1 HAESA-like 1 (.1) AT5G53890 199 / 1e-52 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT3G19700 194 / 5e-51 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G20480 188 / 5e-49 EFR EF-TU receptor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G196600 [exp] 1332 / 0 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G155100 [exp] 786 / 0 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G116300 [exp] 775 / 0 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G188700 [exp] 226 / 2e-61 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G198000 [exp] 223 / 2e-60 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G088100 [exp] 214 / 1e-57 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.001G472900 [exp] 212 / 1e-56 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.003G156200 [exp] 209 / 2e-55 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.018G107400 [exp] 206 / 3e-55 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010823 [exp] 847 / 0 AT2G16250 717 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023570 [exp] 734 / 0 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10040455 [exp] 727 / 0 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031689 [exp] 239 / 5e-66 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 231 / 4e-63 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10033533 [exp] 211 / 3e-56 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 208 / 2e-55 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10008849 [exp] 205 / 2e-54 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10028612 [exp] 202 / 3e-53 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10012193 [exp] 194 / 3e-51 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G260100.8 pacid=42779321 polypeptide=Potri.002G260100.8.p locus=Potri.002G260100 ID=Potri.002G260100.8.v4.1 annot-version=v4.1 ATGAAAGAGCTTCTTTTAGTTACAATCTTGGTCTTGTTTCACTGCACGTTGGGTCAGCAAGGTTTCTTGACAAGAAATGAACTGTCAGCTTTGTTTGATC TCCGGTCATCGTTGGGGATTAGGAGCACAGACTGGCCAATAAAATCCAACCCCTGCAAGCAATGGACAGGAATCCAATGCAGAAATGGGCGGGTCATTGG GATCAATATATCCGGGCTTAAGCGGACCCGGGTCGGCCGTTTGAACCCCAGTTTCAGTGTTGATTCTTTGGCTAATTGTACTTTCTTGGAGTCTTTTAAT GCTTCAGGGTTTTCACTTCCTGGTCCGATACCGGATTGGTTTGGTTACCAGCTTGGTTCTTTGAAGGTCTTGGATCTCCAGTCTAGTTCAGTCACCGGTC CGATTCCTGCTTCGCTTGGTAATTTAACTAGACTCAATGCTTTATATCTAGGCAGTAATGATCTTGCTGGTAGTCTACCTGCTGCATTGGGGCAGTTAAT GCAGCTATTAGTTCTTGATCTTTCAAGGAATTCACTTACTGGGCAGCTACCAAGTGAATTTGGATTGCTTAGGAATCTATCAAAACTTGACCTTTCTTCC AATTATTTTTCTGGGTCCATACCATCTACTTTTGGTAGTATTTCTAGTCTGAAAATCTTGAATTTGTCTGATAATAGTCTTATGGGTTCGGTGCCTGTTG AATTGGGTAATCTTTCTAACTTGGTTGAGCTTAATCTTGGCATGAATGTGTTATCCGGGTTGTTGCCTGTAGAGTTTATGCGGTTGAGGAATTTGGAAGT GTTGGTGTTGAGGGATAATCGATTGGAGGGTAGATTACCGGATGGTTTGTTTCCGAGTCTCGGAAAATTGAGAGTTTTGGAGTTGAGAGAGAATAAATTT GATGGTGCTCTTCCTGATGCATTGTGGTCGTCGCAGAATTTGCAGGTTCTTGATGTTTCTGCTAATAATTTTACAGCTGATTTGACGAATTTTAGTCTCA AGGGTCATGCCAGTGGTGCTGTGTTTAATCTTTCCAACAATAAGTTATATGGAACTCCGGCTTGTTTATCTGAGAACTGTACTTCCATTGATTTTTCGGG TAATTATTTCCAAGGAAAGGTTACTATTAGCAGTCCAAGAAATGGTAGCCTTGACATGAACTGCCTTCAGACAGTGCCTTATCAGAGGAGCTTGGAAGAT TGTAGATTGTTTTATGCTGAGAGAGACTTAACTTTCGATTATTTTGGAAATCCAGAGCCAGGTTCTGTCCCAAAGAAACGCAAGCGATGGATATACATTT TGGTGGGATTGCTTGGTGGAGTTGGTTTCCTTACGATTTTGGTACTGGTGATCGTGGTGGTCCTTAGGAAGTTTAGTAATACCATTACAAATGAAAGAGG AAGTGCAGATGTGGGGCGTGTTCCAGATGGAGATAGCCCACCACTTCCTAAGGATCCTACTAGCGTATCTAGTCTGAGAGACTCATTCACATATGAACAG TTACTCGGTCTGACTAGTGAATTTGGTGAAAGAAATCTCATCAAACATGGTCACTCTGGAGATCTCTACCAGGGTTTTTTGGAAGGAGGAATTCCTATCG TTGTCAAAAGGATCAATTTGCATAGCTTGAAACAGGATTCCTGCATGATGGAATTAGAATTTTTCAGCAAGCATTCACATGCACGTTTAGTCCCTCTTTT GGGACATTGTTTGGAGAACGAAAATCACAAGCTTTTGGTGTACAAATACATGCCAAATAGGGACTTGGCTGAGTCTTTGTACAGGGTAACCAATTTTGAA GACGATGGTTTGCAGTCCCTGGATTGGATTACAAGACTGAAAATTGCTACAGGAGCTGCTGAAGGTCTCTCTTACCTGCACCAGGAGTGCAACCCTCCCC TTGTCCATAGAGATGTTCAAGCGAGCAGTATCCTTCTTGATGATAAGTTTGAGGTTCGACTCGGAAGTTTGAGTAGGGTTCGTGTCCAGGAAGGGGATTT GCATCAAAGTGTTCTCACAAGGTTCTTGCGGAAGTCCCAATCCTCTGTCTCTGATCCAGGGACTTCTGGTACGTTGAACTCTCTCACAAGCTCATCTCCG GCAACTTGTGCTCATGATGTGTATTGTTTTGGCAAGGTCTTGCTTGAGCTCGTTACAGGCAAGCTTGGCATAAGCAAATCAGATGATGCCACCACAAGGG AGTGGTTAGAACACGCGCTGGCGCAGATCAGTGTATATGACAGGGAGCTGGTGGCAAAGATTGTTGACCCATCTATGATCGTTGATGAAGATTTATTGGA AGAGGTATGGGCAATGGCCATCGTGGCTAGGTCATGCCTTAATTCCAAACCTTCTAAACGCCCTCCAATGAAATATGTCCTCAAAGCATTGGAAAACCCT CTGAAAGTGGTAAGAGATGACATGTATAGCTCGGGAAGGCTGAGAACAACTTCATCTAGGAGATCTTGGAGTGCTGCTTTTTTTGGTAGCTGGAGACATA GCCCAGATAACGCCTCAACTCTGGGCCATGCTAATACCAGTGGCTTAAAGCAGCCAGGGAGAGCAGGATCTCGAGGCAGCAGTGGGATTGAGCATTCATC TTCTAATAAAAGGTTATCCAGCGAAATCTTTCCTGAACCACTTGAAATGCAAGATATGGAGAGGCTAGATGAGCATAGATGA
AA sequence Show only first row Show all	>Potri.002G260100.8 pacid=42779321 polypeptide=Potri.002G260100.8.p locus=Potri.002G260100 ID=Potri.002G260100.8.v4.1 annot-version=v4.1 MKELLLVTILVLFHCTLGQQGFLTRNELSALFDLRSSLGIRSTDWPIKSNPCKQWTGIQCRNGRVIGINISGLKRTRVGRLNPSFSVDSLANCTFLESFN ASGFSLPGPIPDWFGYQLGSLKVLDLQSSSVTGPIPASLGNLTRLNALYLGSNDLAGSLPAALGQLMQLLVLDLSRNSLTGQLPSEFGLLRNLSKLDLSS NYFSGSIPSTFGSISSLKILNLSDNSLMGSVPVELGNLSNLVELNLGMNVLSGLLPVEFMRLRNLEVLVLRDNRLEGRLPDGLFPSLGKLRVLELRENKF DGALPDALWSSQNLQVLDVSANNFTADLTNFSLKGHASGAVFNLSNNKLYGTPACLSENCTSIDFSGNYFQGKVTISSPRNGSLDMNCLQTVPYQRSLED CRLFYAERDLTFDYFGNPEPGSVPKKRKRWIYILVGLLGGVGFLTILVLVIVVVLRKFSNTITNERGSADVGRVPDGDSPPLPKDPTSVSSLRDSFTYEQ LLGLTSEFGERNLIKHGHSGDLYQGFLEGGIPIVVKRINLHSLKQDSCMMELEFFSKHSHARLVPLLGHCLENENHKLLVYKYMPNRDLAESLYRVTNFE DDGLQSLDWITRLKIATGAAEGLSYLHQECNPPLVHRDVQASSILLDDKFEVRLGSLSRVRVQEGDLHQSVLTRFLRKSQSSVSDPGTSGTLNSLTSSSP ATCAHDVYCFGKVLLELVTGKLGISKSDDATTREWLEHALAQISVYDRELVAKIVDPSMIVDEDLLEEVWAMAIVARSCLNSKPSKRPPMKYVLKALENP LKVVRDDMYSSGRLRTTSSRRSWSAAFFGSWRHSPDNASTLGHANTSGLKQPGRAGSRGSSGIEHSSSNKRLSSEIFPEPLEMQDMERLDEHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16250			Leucine-rich repeat protein ki...		Potri.002G260100 [exp]	0	1
AT5G61520			Major facilitator superfamily ...		Potri.004G233700 [exp]	2.44	0.9262
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	2.64	0.9378	PE6.1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G013140 [exp]	6.63	0.9180
AT1G71710			DNAse I-like superfamily prote...		Potri.002G063500 [exp]	11.40	0.8852	Pt-IP5.2
AT1G70880			Polyketide cyclase/dehydrase a...		Potri.004G020000 [exp]	13.63	0.8668
AT5G42390		SPP	stromal processing peptidase, ...		Potri.014G149200 [exp]	15.29	0.9155
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	20.44	0.9020
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.001G348000 [exp]	20.49	0.8947
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.017G142800 [exp]	23.87	0.8332	FRO2.1
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.004G028000 [exp]	25.92	0.8588	ARK3.1

Compare expression of checked genes

Potri.002G260100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.