Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19430 953 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 581 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 570 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 568 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 565 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 476 / 3e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 445 / 5e-148 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 379 / 2e-121 Putative methyltransferase family protein (.1) AT2G39750 378 / 5e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 367 / 2e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065200 [exp] 588 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 584 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 582 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 580 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 578 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G017400 [exp] 554 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 480 / 3e-161 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 373 / 2e-119 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 369 / 8e-118 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032717 [exp] 909 / 0 AT1G19430 867 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000716 [exp] 854 / 0 AT1G19430 795 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 577 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 571 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 565 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 560 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 559 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 548 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 547 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 537 / 1e-179 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G260600.1 pacid=42780119 polypeptide=Potri.002G260600.1.p locus=Potri.002G260600 ID=Potri.002G260600.1.v4.1 annot-version=v4.1 ATGACCATAGCTAGGCTTGCTCGTCAGGCAAAAAGGCCACGCGGGTTTTGTGTAAAGATGACGGCAGTGGCAGTAATGGGGTTTTGCTTTATATTTGTTT GGTCTATGTTTTCTTCCTCTTCTACCTCAGCAACCACTCAAAGGGAGAGCTTTGATGATATTGCTGAACCAGTTGCGGGAAACACCAGGGTAAGCAGACC TCATACTCAGTCTAGAGAGAGAGAGAAAGAAAAACATGAACCAAGTAGAGTAAATGAGAAGCAAAATGGTGAATCTGATTTGGATTTGAAGAAAGATGAG AAAAAGATTAATGGGTCTGTTTCTTTGGTTGTTAATGAGCATGAATCTAGGAGAAAGGATAAAAAGGAAGAAGCTTCACTTGAGAGAAAAGAGAAAGATG ATGGTACTAAGAAGTTGCCTAATGAGGGGGAGAAAGATAATCAAGGGCAAGAGGAATCAGGGGATGAAGAATCAGAAAAGGAAGAGGAGGAAGGTGAAGT GGTGGATGGTAAGAAAGAGGCGAATGATGGTGAAAATACTGAAGGGAATGGTGATATTCAAGGAGATGGTGATTTGATTCAAAATGCTGATCAAGAATCT GTGGAGGAAGTGGAACATGAGAGTGCTGGATCGAAAAGCACAGGCAAGAAGAGGAAAATAAAGGGTCCTGTGTTTGATCCAAACGCACATTACAGTTGGA GGTTATGTAGCACAAGAAGCAAGCATAATTATATGCCTTGCATTGACATTGAGAGTGGCACTGGAAGGTTGCAAAGTTATAGGCATACTGAGAGAAGTTG CCCGAAAACACCTCCAATGTGTCTTGTTCCACTCCCTCATGAGGGGTATGGAACCCCGGTCCATTGGCCTGAAAGCAAATTGAAGGTATTGTATAGCAAT GTGGCACATCCAAAACTTGCTGCATTTATTAAGAAAAATAGTTGGCTGGTGCAGTCTGGAGAATATCTTACCTTTCCTCAAAACCAGTCTGAATTCAAGG GTGGAGTTCAGCATTACCTCGACTCCATTGAAGAGATGGTGCCTGACATTGAGTGGGGAAAGAATATTCGTGTAGTGTTGGATATTGGATGTACAGATTC AAGCTTCGCAGCATCTCTCCTTGATAAGGAGGTGTTAACATTATCACTTGGGCTGAAGGATGATCTAGTTGACCTTGCTCAGGTTGCCCTCGAGCGGGGT TTTCCTACAATAGTCAGCCCTTTTGGGAGTAGAAGGCTTCATTTCCCTAGTGGTGTTTTTGATGCTATTCACTGTAGTGGGAGCAGCATTCCTTGGCATT CCAATGGGGGCAAACTTCTCCTTGAGATGAATAGGATTTTAAGACCTGGTGGATACTTTATTTTGTCGACTAAACATGACAATATTGAAGAGGAAGAAGC TATGACCACATTGACAGCATCTGTCTGTTGGAACGTTCTGGCTCATAAAACTGATGAAGTGGGTGAAGTGGGTGTCAAAATATATCAAAAGCCCGAGTCA AATGATATATATGGGTTGAGGAGACGGAAACATCCACCTCTGTGCAAGGAAAATGAAAATCCAGATGCAGCCTGGTATGTTCCTTTGAAGACTTGCTTAC ACCCTGTTCCATCTGCAATCGAACAACACGGGACAGAGTGGCCTGAGGAATGGCCTAAGAGGCTTGAAACTTATCCTGACTGGATGAACAATAAAGAAAA ACTGGTTGCTGATACCAACCACTGGAAAGCTATTGTTGAGAAGTCTTATCTCACGGGAATGGGAATTGACTGGTCAAATATCCGGAACATTATGGACATG AAAGCCATCAATGGAGGATTTGCTGCTGCTCTTGCACAACACAAGGTTTGGGTGATGAATGTGGTTCCCGTCCATGCACCAGACACACTTCCTATCATAT ACGAACGTGGGCTAATTGGTGTCTATCATGACTGGTGCGAGTCCTTTGGCACATATCCAAGATCATATGATCTGTTACACGCTGATCATCTATTTTCACG GCTCAAGAACAGGTGTAGACAGGCTGCATCGATTGTCGTCGAGATGGATCGTATGTTACGACCAGGAGGCTGGGCAGTTATACGAGATAAGGTTGAGATA CTAGATCCACTAGAGGGAATACTGAGAAGTTTGCATTGGGAGATTCGCATGACATACGCTCAGGATAAAGAGGGCATACTGTGTGCACAAAAAACCATGT GGCGCCCTTAA
AA sequence Show only first row Show all	>Potri.002G260600.1 pacid=42780119 polypeptide=Potri.002G260600.1.p locus=Potri.002G260600 ID=Potri.002G260600.1.v4.1 annot-version=v4.1 MTIARLARQAKRPRGFCVKMTAVAVMGFCFIFVWSMFSSSSTSATTQRESFDDIAEPVAGNTRVSRPHTQSREREKEKHEPSRVNEKQNGESDLDLKKDE KKINGSVSLVVNEHESRRKDKKEEASLERKEKDDGTKKLPNEGEKDNQGQEESGDEESEKEEEEGEVVDGKKEANDGENTEGNGDIQGDGDLIQNADQES VEEVEHESAGSKSTGKKRKIKGPVFDPNAHYSWRLCSTRSKHNYMPCIDIESGTGRLQSYRHTERSCPKTPPMCLVPLPHEGYGTPVHWPESKLKVLYSN VAHPKLAAFIKKNSWLVQSGEYLTFPQNQSEFKGGVQHYLDSIEEMVPDIEWGKNIRVVLDIGCTDSSFAASLLDKEVLTLSLGLKDDLVDLAQVALERG FPTIVSPFGSRRLHFPSGVFDAIHCSGSSIPWHSNGGKLLLEMNRILRPGGYFILSTKHDNIEEEEAMTTLTASVCWNVLAHKTDEVGEVGVKIYQKPES NDIYGLRRRKHPPLCKENENPDAAWYVPLKTCLHPVPSAIEQHGTEWPEEWPKRLETYPDWMNNKEKLVADTNHWKAIVEKSYLTGMGIDWSNIRNIMDM KAINGGFAAALAQHKVWVMNVVPVHAPDTLPIIYERGLIGVYHDWCESFGTYPRSYDLLHADHLFSRLKNRCRQAASIVVEMDRMLRPGGWAVIRDKVEI LDPLEGILRSLHWEIRMTYAQDKEGILCAQKTMWRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	0	1
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	1.73	0.9163
AT5G20600			unknown protein		Potri.012G036500 [exp]	2.00	0.9158
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Potri.004G151800 [exp]	2.82	0.9006
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Potri.009G012300 [exp]	4.00	0.8802
AT1G20970			unknown protein		Potri.006G191500 [exp]	4.00	0.8941
AT4G33640			unknown protein		Potri.007G116400 [exp]	4.24	0.8918
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Potri.001G172800 [exp]	5.91	0.8996
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.006G187700 [exp]	6.00	0.8990
AT2G27310			F-box family protein (.1)		Potri.004G199300 [exp]	6.48	0.8723
AT4G25670			unknown protein		Potri.017G143215 [exp]	6.92	0.8867

Compare expression of checked genes

Potri.002G260600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.