Plant FIBer expression Database

Potri.002G260700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75200 896 / 0 flavodoxin family protein / radical SAM domain-containing protein (.1)
AT3G02280 54 / 3e-07 Flavodoxin family protein (.1)
AT4G24520 48 / 2e-05 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G092100
[exp]
50 / 3e-06 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2)
Potri.004G101100
[exp]
49 / 9e-06 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
Potri.006G167200
[exp]
46 / 6e-05 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012082
[exp]
942 / 0 AT1G75200 959 / 0.0 flavodoxin family protein / radical SAM domain-containing protein (.1)
Lus10025484
[exp]
56 / 3e-08 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2)
Lus10017589
[exp]
44 / 0.0003 AT3G02280 810 / 0.0 Flavodoxin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0042 Flavoprotein PF00258 Flavodoxin_1 Flavodoxin
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0036 PF08608 Wyosine_form Wyosine base formation
Representative CDS sequence
>Potri.002G260700.3 pacid=42777798 polypeptide=Potri.002G260700.3.p locus=Potri.002G260700 ID=Potri.002G260700.3.v4.1 annot-version=v4.1
ATGCCGCTAACCTCCACTCCCGCTCGCTTAACTCTCCTTGCTCTCCTCTCCGCCACCACAATCTACTGCTTCTACAAATCTCGCCGCCTCAAAAAAATCT
CCCTAAACCCTAACCCTAACAAACCCAAACTCTTCTTCATCTCCCAAACTGGCACTTCCAAAACCCTAGCTCATCGTCTCCACAATCTCCTAGCCTCAAA
CAATCTCCATTTTGACCTCATCGACCCTCAGAATTACGAGCCTGAGGACCTCTTCAAAGAAAAATTGGTCATAATTATCGCTTCCACTTGGGAAGATGGT
AAACCGCCTCAAAATGCCAAATTCTTCGCGAATTGGCTTGCCGAAAGCGCTGACGACTTTCGTGTCGGTTCGTTGATGCTCTCGGAATGTAAGTTCGCGG
TTTTTGGTGTAGGAAGTAGAGCTTATGGCGAGACATTTAATGCTGTGGCTAAAGATTTTTCGCGGCGGTTGAGGGATTTGGGAGCGAAGGAGGTTGTGGG
AGTTGGGGAGGGTGATGTGGATGGTGGTGAATTGGATGGGGTTTTTGAGGAGTGGAGTGGGAGATTAGCTAGGGTTTTGAAAGGAGAGAGTGTGGAGAAT
GGAGAGGTTTGTGGAAATGGAGTGGTTGTTATTGATGAGAGCGATGACGATGAGGACGATGGTGGGGTGGAATCGGACATTATTGATCTTGAAGATATTG
CGGGTAAAGGGCCGTCAAGGAGGTCACTTGCCGTGGCTCAAAGTAATGGGAAATTAAATGGAGAGAATGGGAAATTGAATGGTCAAAAAGAAATGGTGAC
TCCGGTGATCAGAGCAAGCTTAGAAAAGCAGGGATACAAAATCATTGGTTCGCATAGTGGTGTTAAGATTTGTAGATGGACCAAATCACAACTTAGAGGG
CGAGGAGGTTGCTACAAGCACTCTTTTTATGGAATCGAAAGTCATAGGTGCATGGAGGCAACTCCTAGTTTGGCATGCGCCAACAAATGTGTTTTCTGTT
GGAGACATCACACAAATCCTGTAGGAAAGAGTTGGCAGTGGAAAATGGATGATCCTCTGGAGATTGTGAATTCTGCCATTGATCTGCATACAAAGATGAT
TAAGCAAATGAAAGGAGTTCCTGGTGTTACTCTTGAGCGATTGAATGAAGGTCTCTCTCCCAGGCATTGTGCTTTATCACTTGTTGGTGAACCTATTATG
TATCCAGAGATTAATACACTAGTGGATGAGCTGCACCGAAGGCAGATATCCACATTTCTAGTAACAAATGCACAGTTCCCTGAGAAGATTCTAATGCTGA
AGCCTGTAACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGAAAGCCTGAAGGCAATTGATAGACCACTTTTTGGTGATTTTTGGGAGCGATTTAT
TGATTCTTTGAAATCCCTCAAGGAGAAGCAACAACGGACTGTTTATCGTCTGACACTGGTTAAAGGGTGGAACACAGAGGATTTAGATGCTTATTTTAAC
CTCTTTAGCGTTGGACAGCCTGATTTCATTGAAATTAAAGGCGTTACCTACTGTGGATCGTCCGCCACATCAAAGTTGACGATGGAGAATGTGCCTTGGC
ATTCTGATGTGAAAGCTTTCTCAGAGGCCATGGCTCTTAAAAGCAAAGGGGAATATGAGGTTGCTTGTGAGCATGTCCACTCATGTTGTGTCCTTTTGGC
AAAAACTGAGAAGTTCAAAGTTGATGGCCAATGGTTCACTTGGATAGATTATGACAAGTTCCATGATCTGGTTGCTTCTGGTAAACCTTTCGATAGCAAG
GACTACATGGCTGCCACACCATCTTGGGCTGTTTATGGAGCTGACGAAGGTGGATTTGATCCGGATCAATCTCGGTATAGGAAAGAGCGACATCATAAAA
CCAACCACTGA
AA sequence
>Potri.002G260700.3 pacid=42777798 polypeptide=Potri.002G260700.3.p locus=Potri.002G260700 ID=Potri.002G260700.3.v4.1 annot-version=v4.1
MPLTSTPARLTLLALLSATTIYCFYKSRRLKKISLNPNPNKPKLFFISQTGTSKTLAHRLHNLLASNNLHFDLIDPQNYEPEDLFKEKLVIIIASTWEDG
KPPQNAKFFANWLAESADDFRVGSLMLSECKFAVFGVGSRAYGETFNAVAKDFSRRLRDLGAKEVVGVGEGDVDGGELDGVFEEWSGRLARVLKGESVEN
GEVCGNGVVVIDESDDDEDDGGVESDIIDLEDIAGKGPSRRSLAVAQSNGKLNGENGKLNGQKEMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRG
RGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPLEIVNSAIDLHTKMIKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIM
YPEINTLVDELHRRQISTFLVTNAQFPEKILMLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKSLKEKQQRTVYRLTLVKGWNTEDLDAYFN
LFSVGQPDFIEIKGVTYCGSSATSKLTMENVPWHSDVKAFSEAMALKSKGEYEVACEHVHSCCVLLAKTEKFKVDGQWFTWIDYDKFHDLVASGKPFDSK
DYMAATPSWAVYGADEGGFDPDQSRYRKERHHKTNH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75200 flavodoxin family protein / ra... Potri.002G260700
[exp]
0 1
AT2G45000 EMB2766 EMBRYO DEFECTIVE 2766, structu... Potri.014G057000
[exp]
1.41 0.9068
AT3G07660 Kinase-related protein of unkn... Potri.014G169900
[exp]
2.44 0.8957
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
5.65 0.8721
AT2G17510 EMB2763 EMBRYO DEFECTIVE 2763, ribonuc... Potri.007G059100
[exp]
6.63 0.8504
AT2G27460 sec23/sec24 transport family p... Potri.009G163300
[exp]
6.85 0.8188
AT1G09680 Pentatricopeptide repeat (PPR)... Potri.017G131400
[exp]
7.74 0.8422
AT5G51300 splicing factor-related (.1.2.... Potri.001G126400
[exp]
8.30 0.8878
Potri.011G162912
[exp]
15.16 0.8701
Potri.019G025833
[exp]
16.97 0.8658
AT3G06190 ATBPM2 BTB-POZ and MATH domain 2 (.1.... Potri.008G200700
[exp]
17.14 0.7872

Potri.002G260700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.