Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75180 349 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT1G19400 325 / 3e-111 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G01500 162 / 1e-47 Erythronate-4-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115800 [exp] 334 / 9e-115 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.002G163300 [exp] 163 / 5e-48 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.014G089600 [exp] 162 / 1e-47 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010803 [exp] 385 / 7e-135 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10016311 [exp] 382 / 2e-133 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10026339 [exp] 204 / 6e-64 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10042323 [exp] 202 / 2e-63 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10007912 [exp] 148 / 3e-42 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10005124 [exp] 137 / 3e-38 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 128 / 6e-35 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10018819 [exp] 0 / 1 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G260900.2 pacid=42779665 polypeptide=Potri.002G260900.2.p locus=Potri.002G260900 ID=Potri.002G260900.2.v4.1 annot-version=v4.1 ATGGAGGGTCCTTATGAAGCATCCAGCAATGGGGAAGCAGCAAAATCCAATCTTCAAATCATTAGATATTCACCATTCAAACCCTGGACCAAATTCGTAT CGCCTTGGTTTGATCTGAGAGTCTTTTATGTCAGGATCAGTAATTTTCAGGTCGATGATTCGACCCCGCAGTTTCTCACTCTCAACCATATTCCTCTAAG TCCTGATACTCTATTGGAAATTAATGGTTCTCGAACTAGCATGTATTCTGATGGTGTTGCTTCGCTTCTTAGGAGAGATCGAGTGGATAGAAAATCAGAA GAAGCTACATTTGTTAGCACAGACAGTATCCGAAGTACTGGGAGTGTGGAATTTGAGGTATTTGATGGAAAGGATCTTGTTCTATCCGGGGTCTTGGAAA TGTCCAGTAGTAATGGTTTCACCGGGGAATCAAAAAGCAGTGTAAAACGGTGGAGGATGAACTGTGACTCCCATATAACCATTGGCACTGGCTTCTTAAA AGGAAAATACAATGGTGGTTCGGAGTTACCACCACCAACCATTGAGGTTTATGTTACAGGTTCCTTCTCGGGGACACCTATCATATTAACCAAGACTTTG CAACTCACTTACCGCAAGAAGCACAATAGGAAGGGCATGTTGGACTCAATTCCTGAGTATGAGACCGCTGAATCCACAAAAAATGCATCACCAGACCATG ATTTGCAGGTAGTTGACTACAGAAGTTACAAGTTAGAAAATGAAGAAGATTATAGTAACATGTACTGGAGGAGAAATGAATACATGGACGGTGAAGATGG TGAACTTTCATGGTTTAATGCTGGTGTGAGGGTTGGTGTGGGGCTTGGGCTTGGCATTTGTCTTGGGATCGGTGTAGGGGTTGGTTTGCTGGTTCGCACT TACAAAGCAACAACGCATAACTTCAAAAGACGGCTTGTGTGA
AA sequence Show only first row Show all	>Potri.002G260900.2 pacid=42779665 polypeptide=Potri.002G260900.2.p locus=Potri.002G260900 ID=Potri.002G260900.2.v4.1 annot-version=v4.1 MEGPYEASSNGEAAKSNLQIIRYSPFKPWTKFVSPWFDLRVFYVRISNFQVDDSTPQFLTLNHIPLSPDTLLEINGSRTSMYSDGVASLLRRDRVDRKSE EATFVSTDSIRSTGSVEFEVFDGKDLVLSGVLEMSSSNGFTGESKSSVKRWRMNCDSHITIGTGFLKGKYNGGSELPPPTIEVYVTGSFSGTPIILTKTL QLTYRKKHNRKGMLDSIPEYETAESTKNASPDHDLQVVDYRSYKLENEEDYSNMYWRRNEYMDGEDGELSWFNAGVRVGVGLGLGICLGIGVGVGLLVRT YKATTHNFKRRLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	0	1
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.017G090300 [exp]	1.73	0.7574
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	4.24	0.8084
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.010G029500 [exp]	8.00	0.7266
					Potri.007G125700 [exp]	8.00	0.7611
AT5G19430			RING/U-box superfamily protein...		Potri.001G275900 [exp]	8.24	0.7516
AT3G26020			Protein phosphatase 2A regulat...		Potri.010G054300 [exp]	8.30	0.6983
AT5G61230		PIA2, ANK6	phytochrome interacting ankyri...		Potri.001G129800 [exp]	11.22	0.7040
AT4G27310	CO		B-box type zinc finger family ...		Potri.013G150500 [exp]	11.83	0.7421
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Potri.008G151100 [exp]	15.09	0.7067
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.006G253400 [exp]	17.14	0.7440

Compare expression of checked genes

Potri.002G260900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.