Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42710 184 / 5e-48 unknown protein AT3G24630 57 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G185300 [exp] 1498 / 0 AT5G42710 195 / 2e-51 unknown protein Potri.018G082300 [exp] 68 / 3e-11 AT3G24630 99 / 4e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016315 [exp] 590 / 0 AT5G42710 179 / 4e-46 unknown protein Lus10010806 [exp] 384 / 5e-120 AT5G42710 179 / 3e-47 unknown protein Lus10010807 [exp] 214 / 4e-62 AT5G42710 165 / 5e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.002G261700.1 pacid=42778875 polypeptide=Potri.002G261700.1.p locus=Potri.002G261700 ID=Potri.002G261700.1.v4.1 annot-version=v4.1 ATGGCTAAGAGGTCGGAATTTGCACAGAAGCTGTTAGACGATCTCCGGTTGAGGAAGGAACGAATGGCTGTGTCTCAGAGCTCAAAAGGTTCGAAATCAG CTGCTCCAGATGTATATGCCAATTCCAAGCAAACTCACAGAGGATCCATGGAAATGAAGACCCATAAAAGTAATGGCATTAGGAGTGGAAGCGCGCACAA TAAAACTAGTGGAAGCAATAGAACACTCTCCCGTGGAGAAGCTTCAACAGAGATTGTTCCTTATGGGAAAGGTCGAAGCTCGAAGCAAATAGGAGATCTG TCCATGGCACTGGCTTTTGCCCTTGAGAATGGTGGAAAACTCAGAAGAATGGATTCGTCTGGCAATAGTTCAATGCTAGGTTTCCTGCATCAAATTGGCA GAAGATCAGTGGAAGTGGGGAGGATGGAAAGAAGTGGTATTGATAGACATGACTCTTCAAGCAACCGTTTCCCTACCCTCTCCCATATCCACATCAAAGA AATATCAAAAGGTGCACAGAAGTTACATCAGATCCTGAGAGCTTGTTCAAATGGCCTTAACTTTGAATCATATTCAATAGAAATTGGCAAGGAACTACTC AAAGGGGCCATGGATTTGGAAGAGTCTTTGAGGATGCTTGTAAACCTGCAAGAAGCTTCAGAATATATGATCACCCCACAGAGCAAAACTCGTATCACGT TGCTTGATGAGGATGACGACGACGATGAAGACAACTTCGTCAGAACAGCTGAGCATAAACAACTTGCTCTGCCAAGGTTCTCCTTTGACAAGCCCTCAAG AAATTCTCATCACATTCAGGAAGTTGCAAGGACTGATCTCAGGCAGAGGCTAATGGCTCTGACTTATTCATCAGAAGCTACAAATTTCAACCATGATAAA CACATTTTACGCACCTCAAATTCAGCTTCTCACAAGAAATCATCTAGCCATGGCTCCACGTCAAAGACTTCAGCAGCATTATCTGAACAGAAGAACCAGT CGAGTTCATCAAAATCCAAACCAGAAAAGGTGAGAATTCCAAATGTAATTGCAAAACTAATGGGCCTGGAGGAGGTTCCAGAAAATGCAGATTCAAAACA CGCAAAGAAAGAGTCAAGTCCCAAGCAGAAAACTGAAAGGAATGTCACAAATAAATCTGCAGAAGGAAGCACTACACGAGAACGCGGGACAAAAGATGCT GAGAATTCAGTGTTCACAGTAAGAAAACAAAAACAGATGCAGCCCAACCAAATTAAGATGCTCCAGGACCCAAAAAATGCCTTGAAAGCAGAAAAGAACC TGCCAAATCACCATGCTAGCTTTGAAATGACTATGCATGATGGAAAGCCACCCAAGAAAGAGGTGGAAGGGATGAAATCAGAGAGAGGCTCGAATAAAGC TAATGTGAAAATGGATAGGCACCAAAGCAACAACATCCAAATGAGCCAAAGCACAGGAAAGCGAAAAACTGTTCAGGACAATACTAAGACCAGAGAGCAG AAAGGGAAAGAACGAGGTGAAACAAGAGAATTAATCCGAAAGCCTGAGCTGCATCAGATGGCATCACTGGCACAAAATGGAGCGGGATCTGCACTTACAA TGCAATGGCAAATAGAGCACAACGCAAGTATTCTTGAAACAGAAAAGAGAGATGAAAACAGGTACATTTACAACGATCAACCGAAGTCCTCCAATGATAC TGGATTCCGACAGCCTCAAACATTCCAGAACTTTGAACAAGAAGACATAAAACATCATGCTGGAGAGAGAGAGTGGCAGATTGCTAGACAGAAGATTCAA GATAGAACTCAAAAAGCGAGTACTGAAGTAATGTCCAAGAACACGACTGCCCCCATGAACGACAATGTGAATTTCCAAAAAAGGCATTCACAGACAAACC AGGCAACTCCTAGCAGTAGAAGTTCTAAAGAATCAGTTGATGGAGTGCCATCCAAAGGGTTTCCAACTGGCAGGCAACATGAAGATCTTGTCTACGGAAT AAGTTCTAATAATATCCAGGCTAGCTTGAAAGATTCAAAGACCATGAACTCGGATCAACATTTCTCCCCAATCGATCTGAAACATGATATGATGAAGAAA ATAAGCAATCCAACTATGCAAGAAAAGCAAGCTCATCCACCAGCCACACAGAATGTGATGAATACCAAGGGACCAAAAGCTAAGACTCCTCGAAGGATTG ATGAACTAGTGACAAGAAAAAGCGGAACCCCACACAGCTTGGCAAGGCCGCAAAAACATCAGACTTCTGCATCGCAAGAAGGTAAACAGAAAAGGCGCGA AAAACTTGGTGGATCCAAAGTTGAACAAGTGAGAGCCATCAGGTCTAGAGAAGCAGAGGCACGCATTGTTAAATCCAGCAAATCAATGGAAATCATCCAG CAATCGGATGTGTTGGAAGATCTGCATAGTAAAGTTGAACAAGCATCCAACTATTATTGTCCTGTGGAAGACAAAAGCCAAATCCTGAAAGGACCAAATA TCCTAGTTCAAACTGACAGTTGTCAAAGCACAGTCTCAACGGTGACAAATGAGCAACAAGGTCAGAAATTGGGCAGGGATCAACAGCAATCTCACAACTT TGTTTTGGATTCACTTAATGGAACTCGTCAAAACAGCAAAGATATTGTTGACCCCTCAAAAATGGAGAAGCAAAAAGCATCGAAATTGGTGGCACCAGAG CCACTAAGTGAAAGTGAAAACCACCTGAAGCAGATCCTGATAAGAAGTCAACTATTCCTTAACACAGTAGAGGCACTGTTCAAACTCGACATCCCTCTGG GCATTCTCCGCACTGGTAGTGAAGAGTACTATCACGACGAAGAAAGCAAGCTCATATTAGACTGCGGATACGAGATAATGAAAAGGAAAGGAAAAAAGGA AGAGCTCAGTGTCCATCCATTGATGGAAATATCTACAACTTGTGTTAAGGTGAAATCTTTGGACAAGTTGATCAAGGAATTGCACAAAGACTTGGAGAAG TTGAAATTCTACGGTAGAAATGGTAATGCTGAGTGTCTTGTTGAAGATTACCTGCCGAAAATGGTGGAATGTGATGTGTACAGCTGGGATTTAGATGTGA ACTGCATGTGGGACTTCGGTTGGGACAAGATGTTTGGATTTCTTGAAAAAGATGATGTTGTAAGGGATGTTGAGAAGTCCATGCTTAATGGCCTACTCGA TGAAGTTACCAGAGACCTTCTGCCAGTATTTTGA
AA sequence Show only first row Show all	>Potri.002G261700.1 pacid=42778875 polypeptide=Potri.002G261700.1.p locus=Potri.002G261700 ID=Potri.002G261700.1.v4.1 annot-version=v4.1 MAKRSEFAQKLLDDLRLRKERMAVSQSSKGSKSAAPDVYANSKQTHRGSMEMKTHKSNGIRSGSAHNKTSGSNRTLSRGEASTEIVPYGKGRSSKQIGDL SMALAFALENGGKLRRMDSSGNSSMLGFLHQIGRRSVEVGRMERSGIDRHDSSSNRFPTLSHIHIKEISKGAQKLHQILRACSNGLNFESYSIEIGKELL KGAMDLEESLRMLVNLQEASEYMITPQSKTRITLLDEDDDDDEDNFVRTAEHKQLALPRFSFDKPSRNSHHIQEVARTDLRQRLMALTYSSEATNFNHDK HILRTSNSASHKKSSSHGSTSKTSAALSEQKNQSSSSKSKPEKVRIPNVIAKLMGLEEVPENADSKHAKKESSPKQKTERNVTNKSAEGSTTRERGTKDA ENSVFTVRKQKQMQPNQIKMLQDPKNALKAEKNLPNHHASFEMTMHDGKPPKKEVEGMKSERGSNKANVKMDRHQSNNIQMSQSTGKRKTVQDNTKTREQ KGKERGETRELIRKPELHQMASLAQNGAGSALTMQWQIEHNASILETEKRDENRYIYNDQPKSSNDTGFRQPQTFQNFEQEDIKHHAGEREWQIARQKIQ DRTQKASTEVMSKNTTAPMNDNVNFQKRHSQTNQATPSSRSSKESVDGVPSKGFPTGRQHEDLVYGISSNNIQASLKDSKTMNSDQHFSPIDLKHDMMKK ISNPTMQEKQAHPPATQNVMNTKGPKAKTPRRIDELVTRKSGTPHSLARPQKHQTSASQEGKQKRREKLGGSKVEQVRAIRSREAEARIVKSSKSMEIIQ QSDVLEDLHSKVEQASNYYCPVEDKSQILKGPNILVQTDSCQSTVSTVTNEQQGQKLGRDQQQSHNFVLDSLNGTRQNSKDIVDPSKMEKQKASKLVAPE PLSESENHLKQILIRSQLFLNTVEALFKLDIPLGILRTGSEEYYHDEESKLILDCGYEIMKRKGKKEELSVHPLMEISTTCVKVKSLDKLIKELHKDLEK LKFYGRNGNAECLVEDYLPKMVECDVYSWDLDVNCMWDFGWDKMFGFLEKDDVVRDVEKSMLNGLLDEVTRDLLPVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42710			unknown protein		Potri.002G261700 [exp]	0	1
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	1.73	0.9352
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Potri.009G006500 [exp]	3.74	0.8780
AT5G59790			Domain of unknown function (DU...		Potri.009G027500 [exp]	4.12	0.8653
AT5G39785			Protein of unknown function (D...		Potri.004G126800 [exp]	4.24	0.9029
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.006G152700 [exp]	4.69	0.8868
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	5.29	0.8935
AT1G01490			Heavy metal transport/detoxifi...		Potri.014G089700 [exp]	5.91	0.8368
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	6.00	0.8882
AT2G31930			unknown protein		Potri.001G232200 [exp]	6.32	0.8881
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	6.63	0.9019

Compare expression of checked genes

Potri.002G261700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.