Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16230 635 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 613 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 513 / 0 Glycosyl hydrolase family 17 protein (.1) AT5G24318 411 / 8e-141 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 361 / 4e-121 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 354 / 3e-118 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 350 / 1e-116 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 336 / 6e-111 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 335 / 2e-110 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 323 / 3e-105 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153800 [exp] 687 / 0 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 681 / 0 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 639 / 0 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 637 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 636 / 0 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182500 [exp] 629 / 0 AT2G16230 504 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184300 [exp] 626 / 0 AT2G16230 511 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G184900 [exp] 626 / 0 AT2G16230 498 / 2e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182321 [exp] 623 / 0 AT2G16230 506 / 4e-177 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040461 [exp] 675 / 0 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 674 / 0 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 637 / 0 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032719 [exp] 482 / 4e-170 AT2G16230 430 / 4e-149 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 404 / 4e-137 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 402 / 2e-136 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 396 / 8e-135 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 395 / 4e-134 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 377 / 2e-127 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 373 / 1e-125 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.002G261800.1 pacid=42776944 polypeptide=Potri.002G261800.1.p locus=Potri.002G261800 ID=Potri.002G261800.1.v4.1 annot-version=v4.1 ATGGCGGTGCTTCCTTCTGCTGTTGCTTTCCTCCTCCTCGTTTCCTTCTCACTGACTGTAAATATTGCAAACTCGCAATCATTTATCGGTGTAAACTACG GCCAAGTTGCTGACAACCTTCCACCACCATCAGCCACCGCAAAGCTTCTCCAATCCACTTCAATCCAAAAGGTTCGATTATATGGATCGGACCCGGCCAT AATCAAAGCCTTAGCCAACACCGGAATTGGAATAGTTATCGGCACTGCAAATGGTGACATTCCAGCACTAGCCTCTGATCCCAGTTTTGCCAAGAACTGG ATCAACACGAACGTGCTCCCCTTCTATCCAGCTTCCAAAATCATCCTCATCAATGTTGGAAACGAGGTGATGACTTCCGGTGACCAGAATCTCATGAACA AGCTCTTACCAGCCATGCAAAATGTACAGAATGCTCTAAATGATGTGTCGCTCGGGGGGGAAATTAAGGTCTCTACTGTTCACTCGATGGGAGTGCTTAA GCAGTCGGAGCCGCCTTCTTCTGGAAGTTTTGATCCAAGCTATGAGGATTTGATGAAGGGCTTGTTGGGGTTTAACAATGCGACTGCTTCGCCTTTTGCC ATCAATCCCTACCCTTACTTTGCTTACAGAAGCGATACAAGGCCCGAGACTCTTGCTTTTTGCCTTTTCCAGCAGAATGCGGGACGGGTGGACGGAAACA CTAAGATTAAGTACATGAACATGTTTGATGCTCAGGTTGATGCAGTTTTTTCTGCACTGAATTCTATTGGATTTAAGAATGTAGAGATTGTGGTGGCTGA GACTGGATGGCCATACAAAGGAGATGACAACGAAATAGGGCCAAGTATTGAGAACGCCAAGGCTTATAATGGCAATTTGATTGCACACCTTCGATCCATG GTGGGCACCCCTCTCATGCCAGGAAAATCAGTGGATACATACCTTTTTGCTCTATATGATGAAGACTTGAAACCTGGACCTGGTTCTGAGCGATCATTTG GACTCTTCAAGCCTGATCTCACCATGGCTTATAATGTTGGGCTCTCTAAAAGTAGCCAGACTCCGGCTACACCAAAAACTCCAACGAACCCATCTCCAAC GTCGAAGAAAGCAACATGGTGTGTGCCTAAGTCTGGTGTATCGGATGCCCAATTGCAGGATAATCTGGATTATGCTTGTGGACGAGGGATTGACTGTAGT CCGATCGAACCAGGCGGGGCTTGCTTTGAACCAAACACACTAGCATCACATGCTGCTTATGCCATGAATCTCTTCTATCAAGCTTCTGATAAAAATCCTT TGAACTGTGATTTCTCACAATCAGCCACTCTCTCGTCCAACAACCCCAGTTATAATGCTTGCACTTACCCCAGTGGCAGTGGAAGCAACTGA
AA sequence Show only first row Show all	>Potri.002G261800.1 pacid=42776944 polypeptide=Potri.002G261800.1.p locus=Potri.002G261800 ID=Potri.002G261800.1.v4.1 annot-version=v4.1 MAVLPSAVAFLLLVSFSLTVNIANSQSFIGVNYGQVADNLPPPSATAKLLQSTSIQKVRLYGSDPAIIKALANTGIGIVIGTANGDIPALASDPSFAKNW INTNVLPFYPASKIILINVGNEVMTSGDQNLMNKLLPAMQNVQNALNDVSLGGEIKVSTVHSMGVLKQSEPPSSGSFDPSYEDLMKGLLGFNNATASPFA INPYPYFAYRSDTRPETLAFCLFQQNAGRVDGNTKIKYMNMFDAQVDAVFSALNSIGFKNVEIVVAETGWPYKGDDNEIGPSIENAKAYNGNLIAHLRSM VGTPLMPGKSVDTYLFALYDEDLKPGPGSERSFGLFKPDLTMAYNVGLSKSSQTPATPKTPTNPSPTSKKATWCVPKSGVSDAQLQDNLDYACGRGIDCS PIEPGGACFEPNTLASHAAYAMNLFYQASDKNPLNCDFSQSATLSSNNPSYNACTYPSGSGSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.002G261800 [exp]	0	1
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Potri.001G213700 [exp]	1.73	0.8474
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	7.74	0.8644
					Potri.006G182400 [exp]	9.27	0.7897
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.007G105000 [exp]	9.89	0.8392
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	12.44	0.8429
AT3G18260			Reticulon family protein (.1)		Potri.015G044300 [exp]	13.71	0.8554
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	14.07	0.8268
					Potri.011G165300 [exp]	20.49	0.8266
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Potri.005G134200 [exp]	20.78	0.8335
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.014G087400 [exp]	21.49	0.7723

Compare expression of checked genes

Potri.002G261800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.