Plant FIBer expression Database

Potri.002G261900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46940 259 / 4e-89 DUT1 DUTP-PYROPHOSPHATASE-LIKE 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010809
[exp]
283 / 2e-97 AT3G46940 271 / 2e-93 DUTP-PYROPHOSPHATASE-LIKE 1 (.1)
Lus10007155
[exp]
280 / 2e-96 AT3G46940 269 / 4e-93 DUTP-PYROPHOSPHATASE-LIKE 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0153 dUTPase PF00692 dUTPase dUTPase
Representative CDS sequence
>Potri.002G261900.1 pacid=42779790 polypeptide=Potri.002G261900.1.p locus=Potri.002G261900 ID=Potri.002G261900.1.v4.1 annot-version=v4.1
ATGCGCCCCAAAATCATGGCGGGAACATTTAGCGCCATCAATTGGAAAATCCCGCCATTGGCGAGCCTCTCTCTACTTAATCACCAAATCCCTGCCCCCT
TCCGTATTCTCAACTCCCGTTTTTGTTACTTTAGAAACCCTCAAGTCCTCAAAATGCCTCCAGCAAATCTACAAAACCACAGCCCTGATATCAAAGAGCC
TTCTCCTAAAGTCCCCAAGCTCCAACATGATAACATCCCGTCATATCTCCTAAGAGTGAAAAAACTCTCTGAAAATGCTGTTTTGCCCTCTAGAGGCTCT
CCCCTTTCCGCTGGCTATGATCTCTCCAGTGCCTCAAAGGCAAAGGTACCAGCTAGAGGAAAGGCCCTTATCCCTACAGATTTGAGCATTGCAATACCTG
AAGGAACTTATGCTCGCATTGCACCCAGATCGGGACTGACATGGAAGCACTCAATTGACGTGGGTGCTGGTGTCATAGACGCAGACTACAGAGGCCCAGT
TGGGGTTATCTTGTTTAATCATTCTGATGTTGATTTTGAGGTCAAGGTTGGCGATAGAATTGCGCAGTTAATCATCGAGAAGATCGTGACTCCTAATGTT
ATGGAAGTCGAGGATCTGGATGCAACGGTGAGAGGTGCTGGAGGGTTTGGATCCACTGGCGTGTGA
AA sequence
>Potri.002G261900.1 pacid=42779790 polypeptide=Potri.002G261900.1.p locus=Potri.002G261900 ID=Potri.002G261900.1.v4.1 annot-version=v4.1
MRPKIMAGTFSAINWKIPPLASLSLLNHQIPAPFRILNSRFCYFRNPQVLKMPPANLQNHSPDIKEPSPKVPKLQHDNIPSYLLRVKKLSENAVLPSRGS
PLSAGYDLSSASKAKVPARGKALIPTDLSIAIPEGTYARIAPRSGLTWKHSIDVGAGVIDADYRGPVGVILFNHSDVDFEVKVGDRIAQLIIEKIVTPNV
MEVEDLDATVRGAGGFGSTGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G46940 DUT1 DUTP-PYROPHOSPHATASE-LIKE 1 (.... Potri.002G261900
[exp]
0 1
AT1G71260 WHY2, ATWHY2 WHIRLY 2 (.1) Potri.003G048700
[exp]
1.00 0.8417
AT5G60390 GTP binding Elongation factor ... Potri.010G219500
[exp]
3.46 0.8142
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.005G162600
[exp]
4.24 0.8364
AT1G03330 Small nuclear ribonucleoprotei... Potri.003G014900
[exp]
4.89 0.7917
AT5G08380 ATAGAL1 alpha-galactosidase 1 (.1) Potri.010G255200
[exp]
8.00 0.7679
AT5G60390 GTP binding Elongation factor ... Potri.010G218800
[exp]
8.83 0.7742
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Potri.009G027000
[exp]
9.48 0.7650
AT1G20580 Small nuclear ribonucleoprotei... Potri.002G010200
[exp]
10.24 0.7892
AT4G36130 Ribosomal protein L2 family (.... Potri.007G013000
[exp]
12.68 0.7711
AT4G02450 HSP20-like chaperones superfam... Potri.002G061500
[exp]
13.78 0.7399

Potri.002G261900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.