Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42950 714 / 0 GYF domain-containing protein (.1) AT1G24300 89 / 2e-17 GYF domain-containing protein (.1.2) AT1G27430 87 / 1e-16 GYF domain-containing protein (.1) AT2G16485 51 / 1e-05 nucleic acid binding;zinc ion binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326700 [exp] 93 / 2e-18 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.001G326500 [exp] 91 / 9e-18 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.017G069220 [exp] 84 / 9e-16 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.004G161700 [exp] 50 / 3e-05 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 46 / 0.0003 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012078 [exp] 1442 / 0 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1) Lus10032720 [exp] 1427 / 0 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1) Lus10032021 [exp] 90 / 2e-17 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2) Lus10035191 [exp] 89 / 4e-17 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2) Lus10011331 [exp] 82 / 4e-15 AT1G27430 718 / 0.0 GYF domain-containing protein (.1) Lus10003139 [exp] 81 / 9e-15 AT1G27430 742 / 0.0 GYF domain-containing protein (.1) Lus10042072 [exp] 48 / 0.0001 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10018078 [exp] 47 / 0.0002 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G262300.3 pacid=42777661 polypeptide=Potri.002G262300.3.p locus=Potri.002G262300 ID=Potri.002G262300.3.v4.1 annot-version=v4.1 ATGGCTAATAATTCCGTCTCCGATTCCCGTCACGGCCTCTCCCTCACGCCTCCTTTCCAGATCTCCAAAGATGCTCAAGGTTCTGACAATCCTATTCCGC TGTCACCGCAGTGGCTTCTGCCAAAACCAGGCGAGAGTAAACCTGGAGTAGGAACAGGGGAAAGCAGCCCGCTTCCAGCTTATGGCAATCGCTCAGATAG CATGAAGTCATCAGGAAACACCGAGGAGATGCATGACCAGAAGAAAAAGGATGTTTTTCGGCCTTCCTTGCTTGATATGGAAACTGGTCGTCGTGATCGT TGGCGTGATGAAGAAAGGGACACCAATTCCACCATGCGTAAAGATCGCTGGAGAGATGGAGATAAAGAGCTTGGCGATAGCCGGCGGATGGAGCGCTGGA CAGAGAATTCATCCACCAAACACTATGAAGCACGCCGTGCCCCTTCCGAGCGCTGGACTGATTCAAGTAACAGGGAAACTAATTATGATCAGCGGCGTGA GAGCAAATGGAACACACGCTGGGGGCCGGACAACAAAGATACAGAAGGTTCGCGTGAGAAGTGGTCAGACTCTGGCAGAGACGGTGACACACCATTTGAA AAGGGGCTGTCTCATCATTCTGGCCATGGAAAAGATGAACGGGAGGTTGATCATTATCGTCCATGGAGATCTAACTCCTCCCAAGGTCGAGGGAGGGGAG AGCCACCTCATCACCAATCTTTAACACCGAACAAGCAGGTTCCAACATTTTCGTATGGTCGAGGACGTGGGGAAAGCACTCCAACGTATCCTCTTGGTCG TGGAAGGCTTAGCTCTGGTGGAATCTCCACGAACAGCGCTTCTACTAATTCTCAATATTCGGGAGGTATTTCAGACAAAGGAGAAAGTGGTCAGTTAAGC TATAGTAGGACTAAATTGGTAGATGTATACAGGATGACTGACATGAAATCACGCCAACTACTGAACGGGTTTGTGCAAGTGCCTTTGCTTACACTGGAAG AGCCCTCGGAGCCACTGGCACTCTGTGCACCCAATCCTGAGGAATTGGTAGTTTTGAAAGGAATTGACAAAGGGGACATAGTAAGCAGTGGTGCACCTCA GATATCAAAAGAAGGATCTCTTGGTCGGAACTCAATTGATTCTACACAACCAATGAGAGCCAAGCCTGGTGGTAAGGAAGATGTGCCACACTCTTTTGAT AATGGTAAAGATGAAAGCCTCAACATTTTGACGGGCGGTCATGGAACATATTCTGATGGATTGTCTCATGAAAGACAGACACAATATCATGGGTCGAGCT CAAAATTGGAAATGATGCAGGAACCTAAGATGTATTCTGATGACAAGTTCAAAGTTGAAGCTTTTAGAGAAACCAGTCCTTACAAAAAGGATGATGAGGT GCCTAGAAGTAGGGAATTGACTGTGGAGGGAAATACTTCTGCGCATTCTGGAACTCCATGGCGAGCCCCATCATTGGTAGAGCAGTTCAATACTGTCTCG CATGACTGGAGAGATGCTTCCAGTGATGTCAGGTCAAGGGCTGCTGATATGGCCCGGAATCAACCCCCAAAAGATTCTGAAAATCCATGGGAAAGCAATG CGGCCAATCCATCATTCTCTAGAGACGAAGCAAAATGGCAGACCAATGAGGATCCCATTATGAAAAGGCAGCCATCTGCTGCTCTGGACAGGGAGCAAGA GGTCAAGAAGTTTTCACAACCCTCTCCTGAGAACCTGGTTCTGTATTATAAGGATCCCCAGGGTGAAATTCAAGGTCCCTTTTCTGGCAGTGATATCATT GGGTGGTTCGAGACTGGATATTTTGGCATAGATTTGCAAGTTCGGCCGGCAAATGCATCACAGGACTCACCCTTTTTGTTGCTTGGTGATGTCATGCCTC ATTTGCGAGCCAAGGCAAGGCCACCACCTGGGTTTGCTGGGACAAAACAGAATGAATTCACTGACACATCTAGCAGGCCAAACATTAGCAGCTTTGGAAA CATGCATCCTAGCTTAAAGGAGTTTGATGTTATAAGAAATGATCCAAGGTCTAAACCTGGTTCAGCAACAGAAGCTGAAAACCGATTCTTAGAGTCACTG ATGTCTGGAAACTTGGGTCCTTCATCACAAGGTTCTCAAGGATTTACTGGAAATAGTTCTGGTGGTGTGCCATCATTGGGAGTTGATGGTGGGAACGATC TACACCTGATGGCAAAGAAAATGGCACTTGAACGACAGAGATCATTACCTGGTCCTTATCCATTTTGGCAGGGAAGAGATGCTCCATCCATAGTTTCAAA GTCAGAAGTTCACCCAGACTCCCTGATGCAACATGCAAAACTCCTATCCTCTTTGTCTGACAATCCGCATCAGCCTCCTCATTCTCAAAATGCTGATTTG ATGTCCATTCTTCAAGGCCTATCTGACAGGCCTGTCTCTGGCATAAATAATGGCGTTAGTGGTTGGTCAAATTTCCCTGCCCAGGAGAGCTTGGATCCAC TTCAGGATAAGATTGACTTGCTCCATGCTCAGAATTTTCCACCACAAGTTCTCTTTGGGCAACAACAGAGACTGCAGCGGCAGAACCCACCTTTAACAAA CCTGCTTGGTCAAGGTATAGACAACCCGTCTGGTATTTTGACACCTGAAAAATTGTTGCCCTCAGCTTTACCCCAGGATCCACAATTACTCAACTTGTTG CAACAGCAGTACTTGCTGCAGTCACATTCCCAGGCTCCTATTCAAACACAGCAGCTTTCAGTGTTAGATAAGCTTTTGTTACTCAAGCAGCAGCAAAAAC AGGAGGAGCATCAACAGTTGTTGTGGCAACAGCAGTTACTTTCCCAAGCTATGCCAGAGCACCATTCTCATCAGCGTTTTGGTGAGCCATCTTATGGAAA ATTACAGACTGCTTCAATAGCTACAGGAAATGCTCCTGTGGATCCTTCTCGGCTTCAGCTGTCTAAAGAATTGCTTACAACTGGTCTACAGTTGCCAGTT TCAAATGTTCAAGATGAACACACTACCAGTTTATTGAATTTGCCACCTCAAGTTACCCATGATGTCACTTATAATGTCAATTCTGAAGCATCTTCTCTCC ATCTTCCACATCAAATGTTTGGGAATGTTAATCTTCAAAAAAGTTGGGGTACAAGTCCCGGAAAACTAGGTGATATTCATCCGAAAGAATCTTTACCAGC ATCACCATTTGTTGATAGCTCACCCTTGCCAGGGCGGATGAACAAATCTTCACATGAGGCTTCTGTTGCATCTGAACCTGTCCCCTCTTCTGACTTCCGT GTTCCTCTTTCACTGGATCATACGTCAGAAGTCCCTTGGAGAACTGAAGAAAGTGCAAAGGTTTTGGTATCTGAGGCTACTGCAGATTCTGTTCATCAGG ATTCTCATGAAATCTCTGATCCAGTAGCGTCAGCAGGAACTGGTGAGAATGCAATTTCAAAGCCCGAACATGCCAGTGTTCTAAAAGTTGAACTAGATAG CTCACTTGATGAGCAGCAGGTTGATAGAGATCGATTGAATACTGAGCCTGAAGTGGCAACAGTAGTGAAAAACATTGAAATTCGTGAGACAAGAAAAGCT TCTGAGAAGAAATCCAGAAAGCAAAAATCTGCCAAGTCAAACTCCTCTTCTGACCAGGCAAAGGTAGCAATAAAGGCTTTGTCTTTGCAGCAATCAAAGC AATCTGAAAATGAGGGGCCAAATGCTGGTCTAACAAGATTTGAATCACATGATGGAACTGGAGAAAATCTTTCTGGGACATCTCCACAAAAGGCAAGAGA CAACAAGTTTGGGACTTCTGCAGAAGTTGTCGAATCCCAGCAGGTTACTAGTTCATTGTCTGCCATCAATTCTGGAGAGGGTGAATCGAAACTAGCTGGG TCCGTCCCGGTTCTTAGTGCACAGATTCAATCAAGTCAACGTGCTTGGAAACCTGCTCCTGGTTTCAAACCGAAGTCATTGTTGGAAATTCAACAGGAAG AGCAAAGGAAGGCTCAGGTTGGCCTGGCAGTTTCTGAGACCAGCACTTCTGTCAACCATGCAAGTTCATCCACTCCTTGGGCTGGGGTTGTGGCTAGTTC AGACCCAAAAATTTCTAGAGATATTCAAAGAGAAATGAATAATACTGACATAAATGTGGGAAAAGCAGAAATTTCACTCTCTTCTAAGAGCAAGAAAAGT CAGTTACATGATCTATTGGCAGAAGAAGTTTTGGCAAAATCTAATGAAAGAGAGATGGGAGTTTCTGAATCTTTATCTGGCCTGACTACTCAACCAGTTG CAACTAACAGTTTAGAATCTATAGATGATGGAAACTTTATTGAGGCTAAAGACACTAAAAAGAATCGCAAAAGGTCTGCTAAAGCAAAGGGGGCTGGAGC TAAGGTGGTAGTGCCTATACCTTCTACTGAAATGGCTGTTAGTTCAAGTCCCATTGAGAAAGGGAAAGGCTCTCGCTCTGTGCAGCAGGAGAAGGAAGTA TTGCCTGCAATTCCATCTGGCCCTTCTTTGGGAGATTTTGTTTTTTGGAAGGGAGAGCCAGCAAACCATTCTCCTTCTCCAGCATGGTCTGCTGACTCCA AGAAGCTTCCAAAGCCCACATCTTTAAGGGACATCCAAAAGGAACAGGAGAAAAAGGTCTCTTCTGCCCAGCCTCAGAATCAAATACCAATTCCTCAGAA ACCTCAGCCCGCTCAATCCGCACATGGAAGTGGCTCTTCATGGTCGCATTCTGCATCTTCTCCTTCAAAGGCTGCTTCTCCTATCCAGATAAATTCCCGT GCTTCTTCTCAGTCAAAATACAAAGGAGATGATGAACTATTTTGGGGCCCGATTGATCAATCTAAGCAGGAGCCTAAGCAGTCAGAATTCCCTCATATTT CAAGCCAGGGAAGTTGGGGAACCAAAAATACTCCTGTAAAAGGAGCACCAGTTGCATCACTAGGGAGACAGAAATCTGTGGGCGGCAGACCTGCAGAGCA TTCACTTTCATCTTCAACAGCCACTACTCAGTCGTCTCTTAAAGGGAAACGAGATACGATGAACAAGCATTCAGAGGCCATGGAGTTCAGGGCTTGGTGT GAAAATGAATGTGTTAGACTTGTTGGGACTAAAGATACAAGTTTCTTGGAATACTGCTTGAAGCAATCCAGATCAGAGGCGGAGATGCTTCTGATAGAAA ATCTTGCATCATTTGATCCTGATCACGAGTTCATCGACAAATTCCTCAATTGCAAAGAGATGTTAGGAGCAGATGTTCTTGAAATAGCCTTTCAAAGGCA GAATGATTGGAAGACCAGTGGGATCAGTGCCAAAGATGTGACTTTTGACAATGCAGGTGTTGAAGATTATGACCGTGAAGATGGGTCGGGGAAGGGTGGA AGCAAGAAGAAAGGGAAAAAGGGGAAGAAGGTCAACCCTTCTGTTTTAGGATTTAATGTTGTCAGTAACCGGATCATGATGGGCGAGATTCAGACACTAG AAGACTAG
AA sequence Show only first row Show all	>Potri.002G262300.3 pacid=42777661 polypeptide=Potri.002G262300.3.p locus=Potri.002G262300 ID=Potri.002G262300.3.v4.1 annot-version=v4.1 MANNSVSDSRHGLSLTPPFQISKDAQGSDNPIPLSPQWLLPKPGESKPGVGTGESSPLPAYGNRSDSMKSSGNTEEMHDQKKKDVFRPSLLDMETGRRDR WRDEERDTNSTMRKDRWRDGDKELGDSRRMERWTENSSTKHYEARRAPSERWTDSSNRETNYDQRRESKWNTRWGPDNKDTEGSREKWSDSGRDGDTPFE KGLSHHSGHGKDEREVDHYRPWRSNSSQGRGRGEPPHHQSLTPNKQVPTFSYGRGRGESTPTYPLGRGRLSSGGISTNSASTNSQYSGGISDKGESGQLS YSRTKLVDVYRMTDMKSRQLLNGFVQVPLLTLEEPSEPLALCAPNPEELVVLKGIDKGDIVSSGAPQISKEGSLGRNSIDSTQPMRAKPGGKEDVPHSFD NGKDESLNILTGGHGTYSDGLSHERQTQYHGSSSKLEMMQEPKMYSDDKFKVEAFRETSPYKKDDEVPRSRELTVEGNTSAHSGTPWRAPSLVEQFNTVS HDWRDASSDVRSRAADMARNQPPKDSENPWESNAANPSFSRDEAKWQTNEDPIMKRQPSAALDREQEVKKFSQPSPENLVLYYKDPQGEIQGPFSGSDII GWFETGYFGIDLQVRPANASQDSPFLLLGDVMPHLRAKARPPPGFAGTKQNEFTDTSSRPNISSFGNMHPSLKEFDVIRNDPRSKPGSATEAENRFLESL MSGNLGPSSQGSQGFTGNSSGGVPSLGVDGGNDLHLMAKKMALERQRSLPGPYPFWQGRDAPSIVSKSEVHPDSLMQHAKLLSSLSDNPHQPPHSQNADL MSILQGLSDRPVSGINNGVSGWSNFPAQESLDPLQDKIDLLHAQNFPPQVLFGQQQRLQRQNPPLTNLLGQGIDNPSGILTPEKLLPSALPQDPQLLNLL QQQYLLQSHSQAPIQTQQLSVLDKLLLLKQQQKQEEHQQLLWQQQLLSQAMPEHHSHQRFGEPSYGKLQTASIATGNAPVDPSRLQLSKELLTTGLQLPV SNVQDEHTTSLLNLPPQVTHDVTYNVNSEASSLHLPHQMFGNVNLQKSWGTSPGKLGDIHPKESLPASPFVDSSPLPGRMNKSSHEASVASEPVPSSDFR VPLSLDHTSEVPWRTEESAKVLVSEATADSVHQDSHEISDPVASAGTGENAISKPEHASVLKVELDSSLDEQQVDRDRLNTEPEVATVVKNIEIRETRKA SEKKSRKQKSAKSNSSSDQAKVAIKALSLQQSKQSENEGPNAGLTRFESHDGTGENLSGTSPQKARDNKFGTSAEVVESQQVTSSLSAINSGEGESKLAG SVPVLSAQIQSSQRAWKPAPGFKPKSLLEIQQEEQRKAQVGLAVSETSTSVNHASSSTPWAGVVASSDPKISRDIQREMNNTDINVGKAEISLSSKSKKS QLHDLLAEEVLAKSNEREMGVSESLSGLTTQPVATNSLESIDDGNFIEAKDTKKNRKRSAKAKGAGAKVVVPIPSTEMAVSSSPIEKGKGSRSVQQEKEV LPAIPSGPSLGDFVFWKGEPANHSPSPAWSADSKKLPKPTSLRDIQKEQEKKVSSAQPQNQIPIPQKPQPAQSAHGSGSSWSHSASSPSKAASPIQINSR ASSQSKYKGDDELFWGPIDQSKQEPKQSEFPHISSQGSWGTKNTPVKGAPVASLGRQKSVGGRPAEHSLSSSTATTQSSLKGKRDTMNKHSEAMEFRAWC ENECVRLVGTKDTSFLEYCLKQSRSEAEMLLIENLASFDPDHEFIDKFLNCKEMLGADVLEIAFQRQNDWKTSGISAKDVTFDNAGVEDYDREDGSGKGG SKKKGKKGKKVNPSVLGFNVVSNRIMMGEIQTLED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	0	1
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	1.41	0.8943
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	2.00	0.8810	SDG29.1
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	2.44	0.8890
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	3.46	0.8767
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	4.89	0.8877
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	5.09	0.8603	HVT1.2
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	6.92	0.8714
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	8.06	0.8775
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	8.12	0.8489	APC1.1
AT4G27190			NB-ARC domain-containing disea...		Potri.013G027300 [exp]	8.12	0.8138

Compare expression of checked genes

Potri.002G262300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.