Plant FIBer expression Database

Potri.002G262601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G181200
[exp]
184 / 1e-54 AT3G56870 179 / 1e-46 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018851
[exp]
82 / 9e-19 AT3G56870 158 / 5e-40 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G262601.1 pacid=42778444 polypeptide=Potri.002G262601.1.p locus=Potri.002G262601 ID=Potri.002G262601.1.v4.1 annot-version=v4.1
ATGCGAAGCAAAGAAAAGGAAACCTGGAATGTTCAGGGATGTCATCATTCAAAGCTACAACATCTTCCTGAAAGGCTCCTTTCAAACTGGAAGGCAATTT
CTCCAGCATCTCAGAAAAAACTGTGCAAGGCTATGGAGTCTGGTGACTTAGGTGATGAAGATTATTACAAGTATGCTAGGAAATTATGCTACAGGAATTT
GAATGAAAATAAGATCGGTAGGCTTGGAAGAGCCTATCAGAACCGGATATTTGATCTCACTATTAGCCCTGAGCGGATCATCAGGAAACTGAAAAGTGAG
GAATATGGTTTCCATTATAAAGACATTCTTAAGGTTCCTCATCCTTCTCGAACTATACCGTGTTTTGCCACTGGGAGCCCTCTGTCCAAAGTTGTTCAGA
GACTGCCATTTCATTTCACAGAAGCAAATGCGTGA
AA sequence
>Potri.002G262601.1 pacid=42778444 polypeptide=Potri.002G262601.1.p locus=Potri.002G262601 ID=Potri.002G262601.1.v4.1 annot-version=v4.1
MRSKEKETWNVQGCHHSKLQHLPERLLSNWKAISPASQKKLCKAMESGDLGDEDYYKYARKLCYRNLNENKIGRLGRAYQNRIFDLTISPERIIRKLKSE
EYGFHYKDILKVPHPSRTIPCFATGSPLSKVVQRLPFHFTEANA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G262601
[exp]
0 1
AT5G45890 SAG12 senescence-associated gene 12 ... Potri.013G118400
[exp]
5.47 0.8012
Potri.002G196500
[exp]
9.32 0.7797
Potri.015G072666
[exp]
9.48 0.7841
AT5G49690 UDP-Glycosyltransferase superf... Potri.017G042650
[exp]
17.02 0.7589
AT3G22910 ATPase E1-E2 type family prote... Potri.016G009101
[exp]
17.34 0.7644
AT5G13710 CPH, SMT1 CEPHALOPOD, sterol methyltrans... Potri.016G056000
[exp]
22.49 0.7534
AT1G30280 Chaperone DnaJ-domain superfam... Potri.004G133100
[exp]
26.26 0.7587
Potri.004G188950
[exp]
27.12 0.7587
Potri.014G114801
[exp]
27.96 0.7587
AT5G42905 Polynucleotidyl transferase, r... Potri.019G032650
[exp]
29.56 0.7587

Potri.002G262601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.