Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45170 327 / 2e-115 unknown protein AT5G42960 326 / 1e-114 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G181000 [exp] 385 / 3e-138 AT5G42960 331 / 7e-117 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010813 [exp] 306 / 3e-107 AT5G42960 294 / 3e-102 unknown protein Lus10007162 [exp] 308 / 1e-101 AT5G42960 300 / 7e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G262700.1 pacid=42779890 polypeptide=Potri.002G262700.1.p locus=Potri.002G262700 ID=Potri.002G262700.1.v4.1 annot-version=v4.1 ATGAGAGCGTCTTTGAAGGGCAGGTACGAAAATGACAAAAGCACCGGCGCTGCTACTGTCGCCTTCAACACCGGCGATGTTAAGCTTCGGGCTTCTGTAA CCGACGCCACCTTCGTCAACGGCCCTAGCTTAAACGGCTTGTCTCTAGCTGTCGAGAAACCTGGCTTCTTCATAGTAGACTACAACGTTCCCAAAAAGGA TTTTAGGTTTCAGTTTATGAATGCTGTTAAGGTTGTGGACAAGCCCTTGAATCTGACATACATTCATAGTAGAGGGGATAAACGTACTATTTTGGACGGG ACTCTTGTGATTGATTCAGCGAACAAAATATCTGCTAATTACATGGTCGGGACGGAGAATTGCAAGTTGAAGTATACTTATGTGCATCGTGGGTTGATGA CATTTGAGCCGTGTTATGACTTGGCAAAGAATTCATGGGATTTTGCGGTATCTCAGAAGGTCTATAGTGATGATGTGCTCAAGGCTACGTATCAAACGTC AAGCAAGAATCTGGGCTTGGAGTGGTCAACGAATTCAAAGCTGAATGGGAACTTCAAGTTTTCTGCATCCGTCAATTTGGCTGAGGAGTCAAAAATGCCA AAATTAAGTGCTGAGAGTATGTGGAACTTTGAGATGTGA
AA sequence Show only first row Show all	>Potri.002G262700.1 pacid=42779890 polypeptide=Potri.002G262700.1.p locus=Potri.002G262700 ID=Potri.002G262700.1.v4.1 annot-version=v4.1 MRASLKGRYENDKSTGAATVAFNTGDVKLRASVTDATFVNGPSLNGLSLAVEKPGFFIVDYNVPKKDFRFQFMNAVKVVDKPLNLTYIHSRGDKRTILDG TLVIDSANKISANYMVGTENCKLKYTYVHRGLMTFEPCYDLAKNSWDFAVSQKVYSDDVLKATYQTSSKNLGLEWSTNSKLNGNFKFSASVNLAEESKMP KLSAESMWNFEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45170			unknown protein		Potri.002G262700 [exp]	0	1
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	2.64	0.9052
AT5G61220			LYR family of Fe/S cluster bio...		Potri.009G079800 [exp]	6.32	0.8988
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	6.63	0.9036
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Potri.010G075900 [exp]	8.71	0.8702
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	11.74	0.8965
AT2G43810			Small nuclear ribonucleoprotei...		Potri.010G178700 [exp]	13.26	0.8791
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.002G187200 [exp]	18.24	0.8885
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	19.28	0.8751
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	20.29	0.8992
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Potri.002G254100 [exp]	27.65	0.9024	PtrcGrx_S12

Compare expression of checked genes

Potri.002G262700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.