Plant FIBer expression Database

Potri.002G262900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75140 645 / 0 unknown protein
AT1G19370 633 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G180900
[exp]
1069 / 0 AT1G19370 660 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010815
[exp]
677 / 0 AT1G75140 648 / 0.0 unknown protein
Lus10007163
[exp]
676 / 0 AT1G75140 646 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G262900.1 pacid=42777587 polypeptide=Potri.002G262900.1.p locus=Potri.002G262900 ID=Potri.002G262900.1.v4.1 annot-version=v4.1
ATGGCAAATACCCACCAAGGCAAGTTGTTCTTTTTCCTCTATTTGCTTTTCATTTCTTGTTCCCCGTCTAGAATTTTGGCAGACTCTAGCTCCGTCTCAA
CCCAACAAGAGCTCGAGCATGATATCCACTATGCTCCTTATCGTGAACGCGAGACTGACTCTAGAATTGAGCTTAATCAACAAGAAGTTTTATTAAATAA
ACTTGAACAACTAGTGAGGAACCTCAGTGAAATAGTTGCTAAATTAGAGCCTAAATTATCTGAGTTACCAAAAGTAGCATCTGTTGATAGAGAACAGAAT
CAAGAGCCAGAAAGGGTTAATCAGGGAAGTTTTGATGGTAAGAGATTGGTTCAAAAAGTTGAAGAAGAGGGATTAGAGGCCAAGACTAGAGATGGAGAGA
GAGTGGGGGCTGTTTCAGTTACAAAGTACAGTCCATTTTGGTCAGAGAGGTTTCAATTCGTGTCTGCTGTGAAATTAGATTCTGATGCAACTTGTATCCA
TGTTTTGCCATTTAGAGATTACGAGGGGCTTAGCAAGTATGTAGCTGTTGGTGATGATAGAGGGAGGGTTTATGTGTTTTTAAGGAATGGGGATGTTGTG
GTTGAGTTTTACACAATGTCTTCTTCACCAATTACAGCTATGGTTTCGTATTTATCGGCTTATAGGAATGAGAGTACTGTGGTAACAGGGCATCAGAATG
GGGCAGTTTTGGTGCATAAACTTCGTGATGTGTCGAACGGGGAGGATTGGAGCACAATTTCTATGGAAAATGTTGGTAAGTTTGCGTTCCTTGAGAATGG
GGAACAAGGTTCACCTATAAGTATCTTGGAAGTGCATCATGTCGGCAGATCAAGGTATATCTTGTCATCGGATGTTAGTGGGGTGATTAGGGTTTTTAGG
GAAAATGGGACTGTTCATGGTTCTGCTATTCCCACAAGTAGACCACTTGCATTCTTGAAGCAAAGGCTTTTGTTTTTGACAGAAAGTGGTGCAGGGTCAA
TAGATTTGAGGAGCATGAAAGTCAGAGAATCTGAATGTGAAGGTTTGAACCAAACTCTTGCTCGGAATTATGTTTTTGACGCCACTGAACGGTCTAAAGC
ATATGGATTTACATCAGGTGGGGATTTGATTAATGTATTGTTGTTAGGGGATATAATGAACTTCAAATGCAGGGTCAGATCCAAGAGAAAATTCGACATG
GATGGACCTCTTGCCTTACAATCGATTAAGGGCTACTTGTTTGTTGTTAACGAAGAGAAGGTTTTTGTGTACAATGTTTCATCTCAGCATTATGTTAGGG
TTGGGGGGCCTCGCCTTCTCTTCTCTGCTCTTCTGGATGAGATCAAATCGTCATTTCTGAATTATCAGTCTGCAGATGCAAACATCGAGAGAAGAAGGGT
CATACCATTAATTGCGAGTGACCGTGAAAAACTTCTTGTTCTTGGCCTCGGGAGTGGGTATGTGGGAATGTATCGTTCTAACCTTCCAATATTTAAAGGA
GAATTCAACACAATGCTATGGACAAGTCCCGTGTTGTTCTTCATACTCTTTCTGTTTGGAGCATGGCAATTCTTTGCCAAGAAGAAGGAAGCACTTACAT
CGTGGGGGCCTGACGATCCTTTTAGCTCCACATCTGCTACAACTGGAGCTCCATTAGGGTCGTCGGCCTCTGCAGACAGGTCATTTGTAGATTCGTCTTC
AAGAAGTAGTGATATGATGGACTTAAGGGCTAGTGGATTGAGACCTCCATCAAGGAGGTATCCTTCTCCTTCTCGATACCCCGGGGGAGCAACCAGTTCC
TTCAGGCCGAGTTCTGCTGATGCCAATGCTAGACCTACTTCTGTTGATCCCAATTACAGAGCATCTTCAGAGCTAAAATTTAGGGGTCCAGCCCTGGAAT
CTACAGGTTACCCTAAAAGAAGGGAGAATCTATATGCAAACAATCAAGTTGTGGATGATAGCAATTGA
AA sequence
>Potri.002G262900.1 pacid=42777587 polypeptide=Potri.002G262900.1.p locus=Potri.002G262900 ID=Potri.002G262900.1.v4.1 annot-version=v4.1
MANTHQGKLFFFLYLLFISCSPSRILADSSSVSTQQELEHDIHYAPYRERETDSRIELNQQEVLLNKLEQLVRNLSEIVAKLEPKLSELPKVASVDREQN
QEPERVNQGSFDGKRLVQKVEEEGLEAKTRDGERVGAVSVTKYSPFWSERFQFVSAVKLDSDATCIHVLPFRDYEGLSKYVAVGDDRGRVYVFLRNGDVV
VEFYTMSSSPITAMVSYLSAYRNESTVVTGHQNGAVLVHKLRDVSNGEDWSTISMENVGKFAFLENGEQGSPISILEVHHVGRSRYILSSDVSGVIRVFR
ENGTVHGSAIPTSRPLAFLKQRLLFLTESGAGSIDLRSMKVRESECEGLNQTLARNYVFDATERSKAYGFTSGGDLINVLLLGDIMNFKCRVRSKRKFDM
DGPLALQSIKGYLFVVNEEKVFVYNVSSQHYVRVGGPRLLFSALLDEIKSSFLNYQSADANIERRRVIPLIASDREKLLVLGLGSGYVGMYRSNLPIFKG
EFNTMLWTSPVLFFILFLFGAWQFFAKKKEALTSWGPDDPFSSTSATTGAPLGSSASADRSFVDSSSRSSDMMDLRASGLRPPSRRYPSPSRYPGGATSS
FRPSSADANARPTSVDPNYRASSELKFRGPALESTGYPKRRENLYANNQVVDDSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75140 unknown protein Potri.002G262900
[exp]
0 1
AT3G58660 Ribosomal protein L1p/L10e fam... Potri.012G145000
[exp]
6.63 0.7620
AT2G30260 U2B'' U2 small nuclear ribonucleopro... Potri.013G153700
[exp]
8.12 0.7310
AT1G09320 agenet domain-containing prote... Potri.013G006900
[exp]
8.94 0.7318
AT4G18905 Transducin/WD40 repeat-like su... Potri.007G019601
[exp]
12.96 0.6917
AT3G63000 NPL41 NPL4-like protein 1 (.1) Potri.014G135590
[exp]
19.51 0.7523
AT3G21060 RBL RbBP5 LIKE, Transducin/WD40 re... Potri.019G000900
[exp]
23.97 0.6729
AT3G16210 F-box family protein (.1) Potri.012G014300
[exp]
25.21 0.7361
AT3G02760 Class II aaRS and biotin synth... Potri.019G071400
[exp]
26.15 0.7034
AT4G01560 MEE49 maternal effect embryo arrest ... Potri.014G108400
[exp]
31.74 0.6782
AT4G38710 glycine-rich protein (.1.2) Potri.009G130200
[exp]
38.79 0.6535

Potri.002G262900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.