Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45160 1163 / 0 Protein kinase superfamily protein (.1.2) AT3G17850 786 / 0 Protein kinase superfamily protein (.1) AT5G62310 728 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G48490 656 / 0 Protein kinase superfamily protein (.1.2.3) AT1G30640 289 / 6e-86 Protein kinase family protein (.1) AT3G23310 279 / 5e-82 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 275 / 9e-81 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT4G33080 271 / 1e-79 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G20470 271 / 2e-79 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 267 / 2e-78 Protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044700 [exp] 814 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 711 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 706 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 611 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G167800 [exp] 277 / 2e-81 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 275 / 1e-80 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G036200 [exp] 273 / 6e-80 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 272 / 2e-79 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 268 / 3e-78 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005470 [exp] 1286 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031332 [exp] 777 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10038912 [exp] 641 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10027196 [exp] 637 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031906 [exp] 581 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10021176 [exp] 273 / 1e-80 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 273 / 1e-80 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10042650 [exp] 272 / 5e-80 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10005707 [exp] 275 / 8e-80 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10033911 [exp] 269 / 2e-78 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G263000.4 pacid=42777314 polypeptide=Potri.002G263000.4.p locus=Potri.002G263000 ID=Potri.002G263000.4.v4.1 annot-version=v4.1 ATGACGGAACCGAGCAGCGAAGAATTAACAGCAGAGGCTACTAATGGAATTCCAACGGGGCTGAATCGGATAAAGACTCGGCGAGTATCATCGAAGGAAC AACTGAGCTCAAAACCTGACGAGTTGACTGAGTCTAAGATTCATGTCGTAGCTTCTTCAAGGCCTCCTGTGAAGGATAAACAGAAACCGATGGCTCAGGG TCGTGGAAAGAGCGCTTCTTTCAAAGCAGATTCCCGTAAAGGAAAGAGCATAGCTCAATGGATCACATCTTATTTATCAAAGGAATCCATTCAAGTTATT AATGATGTTTCTCCAAATGTTGAGGAGGGGAATTTGGAAGCTAAGACGCCTGATAGAAAGGAGCGTGCAGGAACTGAATTTACCAGTGGATGCAATTATT TAAATGAGGAAATTTCTTCATCAGAGAATCCAAACCGGAGTAAAGTGTCAAAAGGCTTAAAAAGCTTTTCCCATGAATTAGGACCAAAGGGTGGCATTCC TCCTGCCCAAACACGGGCTCATAGCTACAGTGATTTGAAGGAGCTGTTGGGTTCTTTGCATTCAAGATTTGATGCTGCTAAAGCAGTAGCAAACACAGAG CTGGCTAGTTTAATCGGGGATGCCATGGATGTCCTTGAGAAAACTGACTTCTCCTTGCAAGAAGAGCAGAAATTGGCTGTAGATCTTCTGACACTGTCTC GATTCTGTATGGAGATGAAGTGTTCACAGTTTCGTACGAAATGTGAAGACATTGTTCAAGATCTGACAGAGAAAAGGCAACAGTGTCAAACAGGAATCCT CAAGTGGCTGTTTACTCGCATGCTTTTCATATTGACACGCTGCACAAGACTATTACAGTTCCAGAAAGACAGTGAACCAATTGATGAGAAGTCTCTTCGT AAATTGAAAAAATGTCTGGAAAGTGTCCCTTCTGTTGAAATGAGCTGGGCTGCCAAGCGTGGGATTGCTGATTCTGATAGTGGTTATGCTTTAAATCAGA AAGTTGATGTAAAGCAAAAGTTGCAGGGACAAATTGCTGCGTCTTCTCTCCCTGCAGAAATATATTGCTGCTCTGAACAGCCAACTGATCAGAGTGACTT AAATTCCAACAAGGATTCTCTGTTTTTGGAACAAAAGTTGCAATCACAAAAATCCAAAAATGACCCAGTTTCACAAGTGCAACATTTTTGTCAGGGCAAT AACAGGTCTTCTGGGAATATTAGTTACAATCAGAACTGTAGTTCGCTTCATGAGCAGGGACAAAATTTAGATGATCCTATTGACAACCAGGGGCGAGTTC TAGACGGATCTGATTTAGTAATCTGTAGGATATGCGAAGAAATTGTTCCAATTTCTCATCTCGAATCCCATTCTTATATATGTGCATATGCAGATAAATG TGACTTAAATTTCCTAGACATAGATGAACGCCTCTCAAACCTTGAAGAGATACTGGAGCAGATTATCGACTCGCGCAATATGAATTTTCATCCATCATAT GGCAGTCCTGAAAATTTGAGAGTACAAAGTACAAACTCTGTCATTACTGAAGGTCAGTCTCCCAAAATAAGTGAATGGAGAAATAGAGGCGTTGAAGGGA TGTTTGAGGACATACATGAGATGGACACTGCCTTTATAGATGATTCTCACTCCCCCTCTGTTAACTTTAAAGGCCACTTGGGTGCAAAGTTACCCAACCA TGGTGCATCCTCACCAGCTGGGAGCATGACATCGATTTCCTCCGCAAATACCCCCAGGGCTGGTCATTTTGATTCCTTCTGGTTAGAGCACAACAATCCT CCTGAGCTAGAAGATGTCCAGCAGATGATTGACCTAGCAGACATAGCACGCTGTGTGGCAGGCACCGATCTTTCAAAAGAAGGGTCATCTGAATTTTTGC TCGCTTGTATGCAAGATTTGCAGGATGTTTTACAGCATAGCAAACTCAAAGCTCTTGTAATTGACACTTTTGGAGGCCGAATAGAGAAACTTCTGCGGGA AAAGTATATACTTGCTTGTGATTTAATGGATACAAAAAGTCCAATTATTGATGAGAGATCTAAGGAAAACTTGAGACTTCCATTTGATAATGCATCTCAA AGCAGTGCGGCATCGACACCTGTGCATGTATCAAATAAAGAGCGGACGAGCATTGATGATTTTGAAATCATTAAACCAATTAGTAGAGGTGCCTTTGGAA AAGTCTTTCTTGCACGCAAACGAACAACAGGAGATCTATTTGCAATAAAGGTGCTCAAGAAATTGGATATGTTACGCAAGAATGATGTTCAGCGCATATT AGCAGAGCGTAACATATTGATAACAGTTCGGAATCCATTTGTGGTTCGATTTTTTTATTCATTCACCTGCAGAGATAACCTGTATCTCGTTATGGAGTAT CTTATTGGAGGTGATCTATACTCTTTGCTGAGAAAAGTTGGTTGCCTTGAGGAAGATATAGCTCGTATATATATTGCAGAACTGGTTCTTGCTTTAGAGT ATCTCCATTCTCATGGAATTGTGCATCGTGATCTGAAACCAGACAATATATTGATTGCACATGATGGGCACATCAAGCTTACAGATTTCGGATTGTCAAA AATTGGCCTTATAAACAGCACCATTGATTTATCAGGACCTGATACAGATAGAAATGCATCTTCAGATCCTCCTAATCCAAATGCTCAACAAACAGAGGAC AGAAATCGGCACTCAGCAGTTGGGACGCCTGACTATCTTGCCCCTGAAATTCTTCTTGGAACTGAGCATGGTTATGCTGCAGATTGGTGGTCTGTTGGAA TAATCTTATTTGAATTTATAACTGGAATTCCACCTTTCACTGCTGAACGTCCTGAGATAATCTTTGACAACATTCTTAATAGAAAAATCCCTTGGCCTTC TGTTCCTGATGACATGTCATATGAGGCCCAAGACTTGATCAACAGGTTGATTATTCATAATCCAAGTCAACGGTTAGGAGCAAATGGATCGACAGAGGTC AAAGCACATCCTTTTTTCAGAGGAGTTGATTGGGACAACCTTGCTCTGCAAAAGGCTGCCTTTGTTCCAAACCCTAACAGTGTAGATGACACGAGCTATT TTGTGTCAAGGTTTCCTCAAATGTCTGTTGGAATGCCAAATGATAAAGCTAGTAGCCATTCTGACAGCGACATGCATGACTCATCTTCAAATTCTGGTGT TGAGATGGATGAATGTGGTGACCTTGCAGATTTTGATTCTTCTCCACTTGATATCTCATTGATAAATTTCTCTTTCAAGAATCTGTCACAATTGGCGTCC ATCAATCATGACGTGCTCTTAGGAAAGGATCCTGCAAAGTTCTCTCCATCTAGAGCTGCGCCGAACACATAG
AA sequence Show only first row Show all	>Potri.002G263000.4 pacid=42777314 polypeptide=Potri.002G263000.4.p locus=Potri.002G263000 ID=Potri.002G263000.4.v4.1 annot-version=v4.1 MTEPSSEELTAEATNGIPTGLNRIKTRRVSSKEQLSSKPDELTESKIHVVASSRPPVKDKQKPMAQGRGKSASFKADSRKGKSIAQWITSYLSKESIQVI NDVSPNVEEGNLEAKTPDRKERAGTEFTSGCNYLNEEISSSENPNRSKVSKGLKSFSHELGPKGGIPPAQTRAHSYSDLKELLGSLHSRFDAAKAVANTE LASLIGDAMDVLEKTDFSLQEEQKLAVDLLTLSRFCMEMKCSQFRTKCEDIVQDLTEKRQQCQTGILKWLFTRMLFILTRCTRLLQFQKDSEPIDEKSLR KLKKCLESVPSVEMSWAAKRGIADSDSGYALNQKVDVKQKLQGQIAASSLPAEIYCCSEQPTDQSDLNSNKDSLFLEQKLQSQKSKNDPVSQVQHFCQGN NRSSGNISYNQNCSSLHEQGQNLDDPIDNQGRVLDGSDLVICRICEEIVPISHLESHSYICAYADKCDLNFLDIDERLSNLEEILEQIIDSRNMNFHPSY GSPENLRVQSTNSVITEGQSPKISEWRNRGVEGMFEDIHEMDTAFIDDSHSPSVNFKGHLGAKLPNHGASSPAGSMTSISSANTPRAGHFDSFWLEHNNP PELEDVQQMIDLADIARCVAGTDLSKEGSSEFLLACMQDLQDVLQHSKLKALVIDTFGGRIEKLLREKYILACDLMDTKSPIIDERSKENLRLPFDNASQ SSAASTPVHVSNKERTSIDDFEIIKPISRGAFGKVFLARKRTTGDLFAIKVLKKLDMLRKNDVQRILAERNILITVRNPFVVRFFYSFTCRDNLYLVMEY LIGGDLYSLLRKVGCLEEDIARIYIAELVLALEYLHSHGIVHRDLKPDNILIAHDGHIKLTDFGLSKIGLINSTIDLSGPDTDRNASSDPPNPNAQQTED RNRHSAVGTPDYLAPEILLGTEHGYAADWWSVGIILFEFITGIPPFTAERPEIIFDNILNRKIPWPSVPDDMSYEAQDLINRLIIHNPSQRLGANGSTEV KAHPFFRGVDWDNLALQKAAFVPNPNSVDDTSYFVSRFPQMSVGMPNDKASSHSDSDMHDSSSNSGVEMDECGDLADFDSSPLDISLINFSFKNLSQLAS INHDVLLGKDPAKFSPSRAAPNT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	1.73	0.9216
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	2.44	0.9124
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	3.00	0.9071
AT1G65540			LETM1-like protein (.1)		Potri.010G178400 [exp]	3.16	0.8788
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	5.00	0.8914
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	5.65	0.8971
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	7.34	0.8807
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.017G018500 [exp]	8.71	0.8656
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	9.48	0.8662
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	9.79	0.8638	Pt-SPL1.4

Compare expression of checked genes

Potri.002G263000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.