Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50700 336 / 6e-111 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 337 / 2e-110 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G14580 327 / 3e-107 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT1G55110 324 / 4e-106 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT2G02080 324 / 2e-105 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G03840 324 / 2e-105 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT4G02670 315 / 2e-103 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT5G44160 312 / 2e-101 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G45260 311 / 2e-101 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G13810 313 / 5e-101 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180600 [exp] 646 / 0 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 335 / 3e-109 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.006G129300 [exp] 334 / 3e-109 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 334 / 5e-109 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 333 / 7e-109 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.005G027200 [exp] 331 / 5e-108 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.016G088500 [exp] 330 / 7e-108 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 331 / 1e-107 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.017G017100 [exp] 329 / 1e-107 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010820 [exp] 345 / 1e-116 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 350 / 3e-115 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 325 / 1e-105 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 315 / 3e-102 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 315 / 4e-102 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041356 [exp] 325 / 3e-101 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10008396 [exp] 314 / 5e-101 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 312 / 3e-100 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004497 [exp] 308 / 2e-99 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 306 / 5e-99 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.002G263600.1 pacid=42777935 polypeptide=Potri.002G263600.1.p locus=Potri.002G263600 ID=Potri.002G263600.1.v4.1 annot-version=v4.1 ATGGTGGGTGGTGAGAATTTATCCAGAATCACAGTATCTAAAGCTTCTGGAGAAGACACAATTAGCAATGTTTCTTCTTTTGGTAACCAAGGCATGCCAC ACTCTATTACAGTGCCACCACCAAAGAAGAAGCGAAATCTCCCTGGAATGCCAGATCCAGATGCAGAAGTCGTTGCGTTATCACCAAAGACTTTAGTAGC CACAATCAGATTCGTGTGTGAGATCTGTAACAAGGGCTTTCAAAGAGACCAGAACCTCCAACTTCACAGACGAGGCCATAACTTACCATGGAAGCTAAAG CAACGAACCAACAAAGAGCCAAGGAAGCGTGTCTATGTTTGTCCAGAGTCATCTTGTGTACATCACAACCCAGCTAGAGCTCTTGGTGATCTTACTGGCA TTAAAAAGCACTTCTACAGAAAGCATGGTGAGAAAAAGTGGAAGTGTGAGAGATGTTCGAAGAAATATGCCGTCCAGTCTGATTGGAAAGCTCACTTGAA AACTTGTGGCACTAAAGAGTATAAATGTGATTGTGGCACTTTGTTTTCAAGGAGGGATAGTTTTGTAACACACAGAGCATTTTGCGATGCGTTAGCGGAG GAGAGTGCAAGGGCGCAAACCCTAGCGATAATGGGAAGGGAAGGGAATGGTTGTGACATCAAGCGTGTGGGTGCTTCACCACCGCCTCCACCACTTACGC CGTCTACTAGTGTGGTGTCTCCGGGTTTATCAGTTCAAAGCTCAGAATTAGCAGAAAATCCAATTGGACTTTCACCACCACCAATAGCATGTGCCTCGGC TACAAGCACAAGCTCAACTAGCTCAACCAGTAATGTATTTGCGACTACATTTGCCTCTTCGACAGCAACACCAGCTGCTATCCCACAACAAGCATCAGTA CCATCCTCTTTCCCAAATCTGTTTTGCGGCTTAGCTCGCTCTGATTATCCCACTACTATGCCAACACCTAGAGCGATAGAACCCCCATCACTCTCTCTTT CACCATCTTTTTATCTCTCCAACAATACTTCGTCTCTCTTCAGCACAGAGCAAGAGCACTACCATTACACACCATCTCCGCAACCAGCCATGTCTGCCAC TGCATTGCTTCAAAAAGCAGCACAAATGGGTGCAACGACATCAAACCCATCATTTCTCCGTGGTTTAGGATTACCCCGTTCAACTAATCAAGACAGTAAT TGCAATAAATGGGATGTGAAGCCAGAGAACAACACCACTGTTGCAGCTGGACTCGGCCTTGGGCTTCCCTCCAGTGATGTTATGATGGGTTCATCTTCAT TGTTTGGAAACAAACCAGCGACACTTGACCTTCTCGGGCTTGGCATGGATGCTGCTAGTTCTGCTTTGCTAAATTCCTATAGTGGTGGCTTTAATGTTGG AGCAGCCACTGCCGCAGCATATGGTGGAGGAGGAGGGAGAGGGACTTCTGAAGAAACATGGGATGGTGTGCCTGAGAGGAAGCCTTATGGATCTACAGGA GCTTGA
AA sequence Show only first row Show all	>Potri.002G263600.1 pacid=42777935 polypeptide=Potri.002G263600.1.p locus=Potri.002G263600 ID=Potri.002G263600.1.v4.1 annot-version=v4.1 MVGGENLSRITVSKASGEDTISNVSSFGNQGMPHSITVPPPKKKRNLPGMPDPDAEVVALSPKTLVATIRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK QRTNKEPRKRVYVCPESSCVHHNPARALGDLTGIKKHFYRKHGEKKWKCERCSKKYAVQSDWKAHLKTCGTKEYKCDCGTLFSRRDSFVTHRAFCDALAE ESARAQTLAIMGREGNGCDIKRVGASPPPPPLTPSTSVVSPGLSVQSSELAENPIGLSPPPIACASATSTSSTSSTSNVFATTFASSTATPAAIPQQASV PSSFPNLFCGLARSDYPTTMPTPRAIEPPSLSLSPSFYLSNNTSSLFSTEQEHYHYTPSPQPAMSATALLQKAAQMGATTSNPSFLRGLGLPRSTNQDSN CNKWDVKPENNTTVAAGLGLGLPSSDVMMGSSSLFGNKPATLDLLGLGMDAASSALLNSYSGGFNVGAATAAAYGGGGGRGTSEETWDGVPERKPYGSTG A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G263600 [exp]	0	1
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	2.23	0.8644
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	2.44	0.8450
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	8.71	0.8154
AT2G27480			Calcium-binding EF-hand family...		Potri.004G202200 [exp]	8.83	0.8123
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	11.18	0.8140
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	15.58	0.7611
AT2G23770			protein kinase family protein ...		Potri.008G160501 [exp]	20.00	0.7483
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	20.97	0.7985
AT4G22660			F-box family protein with a do...		Potri.006G015601 [exp]	21.74	0.7475
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.001G406500 [exp]	24.37	0.7543

Compare expression of checked genes

Potri.002G263600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.