Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 493 / 1e-171 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 429 / 3e-146 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14690 346 / 8e-114 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G46960 344 / 6e-113 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT2G46950 343 / 9e-112 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14610 333 / 6e-109 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14640 328 / 1e-106 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 325 / 8e-106 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT4G27710 323 / 9e-105 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14660 321 / 5e-104 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035200 [exp] 592 / 0 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 573 / 0 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043000 [exp] 566 / 0 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G180500 [exp] 556 / 0 AT1G75130 494 / 6e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043100 [exp] 540 / 0 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 436 / 8e-149 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 429 / 4e-146 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G022200 [exp] 352 / 8e-116 AT2G46950 527 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Potri.011G117600 [exp] 350 / 3e-115 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016310 [exp] 595 / 0 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010821 [exp] 503 / 1e-174 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010802 [exp] 436 / 4e-151 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 416 / 2e-140 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 362 / 4e-120 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 342 / 5e-112 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 336 / 1e-109 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026084 [exp] 335 / 3e-109 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 333 / 8e-109 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10004633 [exp] 328 / 9e-107 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G263800.1 pacid=42779723 polypeptide=Potri.002G263800.1.p locus=Potri.002G263800 ID=Potri.002G263800.1.v4.1 annot-version=v4.1 ATGTATGATCTCATATTAGTTTCGGTTTCTACAACCATCTTGGTTATTCTGGTAGCTGTCCTGACCAAATTTGTCTACTCAATATTATGGGTTCCTTACA AAATCCAACACCACTTCTACAAACAAGGCATAGGTGGCCCTGGCTACCGTCCCATATTTGGTAACACGGCTGAGAGGCGTCGATTAGTGAAAGAAGCTCT ATCAAAGCCAATAGCTCCACCATTTCACCACAATATTCTTCATCGTGTTTTTCCAACTTACAGCGTGTGGTCTAAAATGCACGGTAAGACCTACTTATAC TGGTTTGGAGCCAAGCCCAGGTTGGTTCTATCCGACCCAGCCACAATTAAAGAGGTTCTGATAAATACTGGCGGACCATTTGAGAGGATGAAGTTCGACC CTGTGACAAAGCAGCTCTTGGGAGACAAGGGACTTATGGAGCTCACGGGTGAGAAGTGGGCTGTTCACAGGAGGATCAGTAGCTTGGCCTTGAACATGGA GCAAGTTAAGGGGTGGGTGCCAAAAATTGTGGCTAGCATAACGGACATGCTTGAGAATTGGGAGGGAAAAAGAGCAGGAAGAGAAGAATTCGAGATGGAT GTGCACAAAGAAATACAAAACCTCTCAGCAGATATTGTTTCCAGGACAATTTTTGGAAGTAGTTTTGAAGAAGGAAAGCGTATTTTTGAGCTACAAGAAA AGCAAATGCACCTTGCCTCCCTGTATTACTCGCATGTCCCTATTCCAGGGTTCAGGTTTTTGCCAACAGAAAAGAATAAAGAGCAGTGGAGACTAGACCA GGAAATTCGCGGATCAATAGAGAAGCTAATTGAGGAGGCTGCTAACAACAGGAGAGAGGAGAAATCTCGAAACTTACTTAGCTTGTTAACTTCTTCCTAT AAGAATCATGATGGTGAAGAAGAGAAATTGGAGGTTGAGGAAATTATAGACGAATGCAAGACATTTTACTTCGCAGGAAAGGAGACAAGCGCTACTGTCT TAACTTGGACATTTATCCTTCTAGCAATCCATCAAGAATGGCAAATCAAGGCCCGTGAAGAAGTAGTTGCTGTTTGCAAAGACAAGGAGCATCCAACTGC AGATATTCTTGGTGAACTTAAGATTATAAATATGATACTACACGAAGCAATTCGACTTTACACTCCGGTCACAATGTTGGTGAGGGAGACATGCAAAGAT GTTAAGCTTCAGGGCCTCCACATTCCTGCTAACACACCACTCATTTTAGCCGTGATTGCAGCTCACCATGACACAAAGGTCTGGGGAGAAGACGCTGACA AGTTCAATCCTCTAAGGTTTTGCGAGCCTCGGAAGCATTCAAGCTCCTTTTTCCCATGGGGTTTAGGCCCTAGAACGTGTGTTGGACAGAAATTAGCCCT TGTTGAGATCAAACTTGTTCTAGCTGTGATCATTAGACAATTTTCGTTTGTGGTATCCCCAAAATATGTTCATGCTCCGGCCGAATTTCTAACCGTTCAG CCTCAATATGGAGCGCAGATCCTTTTTAGGAAAATCTTAAATTAA
AA sequence Show only first row Show all	>Potri.002G263800.1 pacid=42779723 polypeptide=Potri.002G263800.1.p locus=Potri.002G263800 ID=Potri.002G263800.1.v4.1 annot-version=v4.1 MYDLILVSVSTTILVILVAVLTKFVYSILWVPYKIQHHFYKQGIGGPGYRPIFGNTAERRRLVKEALSKPIAPPFHHNILHRVFPTYSVWSKMHGKTYLY WFGAKPRLVLSDPATIKEVLINTGGPFERMKFDPVTKQLLGDKGLMELTGEKWAVHRRISSLALNMEQVKGWVPKIVASITDMLENWEGKRAGREEFEMD VHKEIQNLSADIVSRTIFGSSFEEGKRIFELQEKQMHLASLYYSHVPIPGFRFLPTEKNKEQWRLDQEIRGSIEKLIEEAANNRREEKSRNLLSLLTSSY KNHDGEEEKLEVEEIIDECKTFYFAGKETSATVLTWTFILLAIHQEWQIKAREEVVAVCKDKEHPTADILGELKIINMILHEAIRLYTPVTMLVRETCKD VKLQGLHIPANTPLILAVIAAHHDTKVWGEDADKFNPLRFCEPRKHSSSFFPWGLGPRTCVGQKLALVEIKLVLAVIIRQFSFVVSPKYVHAPAEFLTVQ PQYGAQILFRKILN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G263800 [exp]	0	1
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.004G097900 [exp]	13.56	0.8559
AT3G18170			Glycosyltransferase family 61 ...		Potri.015G042300 [exp]	13.67	0.8648
AT3G05900			neurofilament protein-related ...		Potri.013G001150 [exp]	23.83	0.7483
AT1G03700			Uncharacterised protein family...		Potri.019G100300 [exp]	26.38	0.8498
AT2G44290			Bifunctional inhibitor/lipid-t...		Potri.006G195700 [exp]	26.94	0.8504
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	31.08	0.7798
AT4G03230			S-locus lectin protein kinase ...		Potri.013G150800 [exp]	36.16	0.8460
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.001G069000 [exp]	38.72	0.8466	7
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121800 [exp]	39.33	0.8452
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	42.00	0.7781

Compare expression of checked genes

Potri.002G263800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.