Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CAND1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02560 1940 / 0 TIP120, HVE, ETA2, ATCAND1, CAND1 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2) AT1G64790 51 / 6e-06 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229300 [exp] 2189 / 0 AT2G02560 1913 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026261 [exp] 2056 / 0 AT2G02560 1968 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2) Lus10042409 [exp] 2026 / 0 AT2G02560 1949 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08623 [poplar] [flax] TIP120 TATA-binding protein interacting (TIP20) CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.003G000500.1 pacid=42786014 polypeptide=Potri.003G000500.1.p locus=Potri.003G000500 ID=Potri.003G000500.1.v4.1 annot-version=v4.1 ATGGCGAATTTACAAATGACGGGTATTCTGGAGAAGATGACGGGTAAGGATAAAGATTACAGATACATGGCAACGTCTGATTTGTTGAATGAGTTAAACA AGGAGGGTTTTAAAGCCGATGCTGATTTGGAGATAAAGTTATCAAATATTGTTCTACAGCAACTCGATGATGTAGCTGGTGATGTTTCTGGATTGGCTGT GAAGTGTCTTGCTCCATTGGTGAAGAAGGTCAGCGAGGCTCGAGTTGTGGAGATGACTAATAAACTATGTGAAAAATTGCTACATGGTAAAGATCAGCAT CGTGACATTGCAAGCATTGCTTTGAAGACTATTGTATCTGAAGTCACAGCAATATCTCTGGCTCAATCTATTCTTGTCACTCTATCTCCACAGTTGATAA AAGGAATAACAAGTCCTGGATTGAACACGGAGATAAAATGTGAATGTCTTGATATTTTGTGTGATGTTCTTCATAAATTTGGAAATTTGATGGCAGATGA TCATGAGGTGCTTTTAAATGCGCTTTTGTCCCAACTGAATTCCAATCAAGCCACCATTAGAAAGAAGACTGTTTCATGCATTGCATCTCTTGCTTCAAGC TTGTCGGATGATTTATTGGGGAAGGCAACAGTTGAGGTAGTTCGGAAATTGAGAAGTAAGGGTGCAAAACCTGAGATGATCCGAACAAACATTCAAATGA TTGGTTCTTTAAGCCGTGCTGTGGGATATCGATTTGGACCCCATCTTGGAGACACTGTGCCAGTGCTAATTAATTACTGCACAAGTGCATCAGAGAATGA TGAGGAGCTTCGTGAATATAGCTTGCAGGCTTTAGAAAGTTTTCTCCTTAGATGCCCCAGAGACATTTATTCTTACTGTCATGAAATTCTTCATCTTACT CTGGAGTACCTAAGTTATGATCCGAACTTCACTGATAACATGGAAGAAGATACTGATGATGAGAGTCTTGAGGAGGAGGAGGAGGATGAGAGTGCAAATG AATATACCGATGATGAAGATGCCAGCTGGAAAGTTCGAAGGGCAGCTGCTAAATGCTTAGCGGCATTGATTGTTTCTCGTCCTGAGGTGCTTGCAAATCT ATATGAGGAGGCCTGTCCTAAGTTGATTGATAGATTTAAAGAAAGGGAAGAAAATGTCAAGATGGATGTGTTCAATACATTCATTGAGCTACTACGTCAA ACTGGAAATGTTACAAAAGGGCAGATTGACATGGATGAATCAAGCCCAAGATGGTTACTGAAGCAAGAAGTGCCAAAGATTGTCAAATCTATAAACAGGC AATTGCGTGAGAAATCTATCAAGACCAAGGTTGGTGCATTTTCAGTTTTGAAAGAACTTGTGGTTGTCTTGCCAGACTGCCTTGCAGAACACATTGGGTC ACTAATTCCAGGAATTGAGAAGGCATTAAATGACAAATCTTCGACCTCAAATTTGAAGATTGAGGCTCTTATATTTACAAGATTGGTATTGGCTTCACAT TCACCCTCTGTTTTCCACCTTTATATCAAGGCCCTTTCTAGTCCTGTTTTGTCTGCTGTTGGTGAGAGATACTACAAGGTCACAGCAGAGGCATTAAGAG TCTGTGGGGAACTTGTTCGCGTTGTCCGTCCCAATATCCAGGGCTTTGGTTTTGACTTCAGACCTTATGTCCATCCAATATATAATGCCATAATGTCACG TTTGACCAACCAAGATCAAGACCAGGAGGTCAAGGAGTGTGCCATTTCTTGCATGGGGCTTGTCATTTCAACATTTGGCGATAACCTCAAAGCAGAATTA CCTGTGTGTCTCCCTGTACTTGTTGATCGTATGGGGAATGAGATAACACGGCTTACTGCTGTGAAGGCTTTTGCTGTAATTGCTGCTTCTCCTCTTCTGA TTGATCTGTCATGTGTCCTGGAGAATGTAATTGCAGAGCTGACTGCATTCCTACGCAAGGCTAATCGGGCTTTAAGGCAGGCAACTTTGGGGACACTGAA TTCTCTAATTGTAGCTTATGGTGATCAAATTGGTTCATCTGCTTATGAAGTTATTATCGTGGAACTTTCAACTCTGATTAGTGATTCAGATTTGCACATG GCAGCTCTTGCCCTGGAACTTTGCTGCACCTTGATGGCTGACAGGAAATCGAGCCCAAATGTTGGTTTGGCTGTTAGAAATAAAGTTCTTCCTCAAGCAC TAACATTAATTAACAGCCCATTGCTACAGGGTCAAGCCCTTTTGGCTTTACGAAACTTTTTTGCTGCTTTAGTCTACTCTGCAAATACAAGTTTTGACAC TTTACTGGACTCGCTTCTTTCACGTGCTAAGCCATCTCCACAGTCAGGAGGTGTTGCAAAACAGGCTTTGCATTCAATAGCCCAATGCGTGGCTGTTCTC TGCCTTGCCGCAGGTGACAAAAAATGTTCATCTACTGTGGACATGCTTACTGATATTCTCAAAGATGACAGTAGTACCAATTCAGCGAAGCAGCACCTTG CACTATTATGCCTGGGAGAAATTGGGAGAAGGAAAGATCTAAGCATGCATGCAAATATAGAAACCATTATTATTGAGTCCTTCCAATCCTCTTTTGAAGA AATAAAGTCTGCTGCTTCTTATGCTCTTGGTAATATTGCCGTTGGTAATCTTTCCAAGTACCTACCCTTTATCTTGGACCAGATTGATAATCAACAGAAG AAACAATATCTCCTGCTTCATTCTTTGAAGGAGGTTATAGTAAGACAATCAGTAGATAAAGCAGAGTTCCAGGATTCCAGTGTTGAGAAGATACTTAAAT TACTATTTAATCACTGTGAAAGTGATGAAGAGGGTGTTCGGAATGTTGTAGCTGAGTGCCTTGGTAAAATTGCACTTATTGAACCTGCAAAGCTCGTTCC TGCGCTTAAGGTGAGAACAACGAGCCCAGCTGCCTTCACCAGAGCAACAGTGGTAATTGCTGTAAAATACTCAATAGTTGAGCGGCTAGAGAAGATTGAC GAGATTATATACCCAGAAATCTCATCGTTTCTTATGCTTATCAAAGATCATGACCGGCATGTTAGGCGTGCAGCTGTCTTGGCCTTGAGCACATTCGCTC ACAATAAGCCTAACCTTATCAAGGGACTCCTTCCTGAATTGTTGCCACTTCTCTATGATCAAACAATTGTTAAGCAAGAATTGATACGAACTGTAGATCT TGGGCCTTTCAAGCATATTGTGGATGATGGCCTTGAGTTGAGGAAAGCAGCCTTTGAATGTGTAGACACATTGCTGGATGGTTGTCTTGATCAAGTGAAC CCTTCATCTTTCATTGTTCCTTACCTCAAATCAGGCCTGGATGATCATTACGATGTTAAAATGCCTTGTCATCTTATCCTCTCAAAATTGGCCGATAAGT GTCCATCTGCTGTATTGGCAGTGCTGGACTCATTGGTGGAGCCCCTCCAAAAAACTGTCAATTTTAAGCCTAAGCTAGATGCTGTGAAGCAAGAAGTGGA TCGCAATGAAGACATGATTCGCAGTGCTCTTCGAGCAATCGCATCCTTGAATCGAACAAGCGGAGGAGATTGCAGCCTTAAATTCAAAAACCTTATGAGT GAAATTTCAAAATCTCAAACCCTTTGGGACAAGTATTATTCCATCCGAAATGAGTGA
AA sequence Show only first row Show all	>Potri.003G000500.1 pacid=42786014 polypeptide=Potri.003G000500.1.p locus=Potri.003G000500 ID=Potri.003G000500.1.v4.1 annot-version=v4.1 MANLQMTGILEKMTGKDKDYRYMATSDLLNELNKEGFKADADLEIKLSNIVLQQLDDVAGDVSGLAVKCLAPLVKKVSEARVVEMTNKLCEKLLHGKDQH RDIASIALKTIVSEVTAISLAQSILVTLSPQLIKGITSPGLNTEIKCECLDILCDVLHKFGNLMADDHEVLLNALLSQLNSNQATIRKKTVSCIASLASS LSDDLLGKATVEVVRKLRSKGAKPEMIRTNIQMIGSLSRAVGYRFGPHLGDTVPVLINYCTSASENDEELREYSLQALESFLLRCPRDIYSYCHEILHLT LEYLSYDPNFTDNMEEDTDDESLEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEVLANLYEEACPKLIDRFKEREENVKMDVFNTFIELLRQ TGNVTKGQIDMDESSPRWLLKQEVPKIVKSINRQLREKSIKTKVGAFSVLKELVVVLPDCLAEHIGSLIPGIEKALNDKSSTSNLKIEALIFTRLVLASH SPSVFHLYIKALSSPVLSAVGERYYKVTAEALRVCGELVRVVRPNIQGFGFDFRPYVHPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLKAEL PVCLPVLVDRMGNEITRLTAVKAFAVIAASPLLIDLSCVLENVIAELTAFLRKANRALRQATLGTLNSLIVAYGDQIGSSAYEVIIVELSTLISDSDLHM AALALELCCTLMADRKSSPNVGLAVRNKVLPQALTLINSPLLQGQALLALRNFFAALVYSANTSFDTLLDSLLSRAKPSPQSGGVAKQALHSIAQCVAVL CLAAGDKKCSSTVDMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSMHANIETIIIESFQSSFEEIKSAASYALGNIAVGNLSKYLPFILDQIDNQQK KQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILKLLFNHCESDEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSPAAFTRATVVIAVKYSIVERLEKID EIIYPEISSFLMLIKDHDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLELRKAAFECVDTLLDGCLDQVN PSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVEPLQKTVNFKPKLDAVKQEVDRNEDMIRSALRAIASLNRTSGGDCSLKFKNLMS EISKSQTLWDKYYSIRNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	0	1	CAND1.2
AT2G03070		MED8	mediator subunit 8 (.1)		Potri.010G253100 [exp]	1.00	0.7656
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	6.92	0.7331
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	9.48	0.7592
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	11.83	0.7153
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Potri.016G000200 [exp]	12.40	0.6450
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	14.56	0.7567
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	19.28	0.6547
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	25.03	0.7183
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	27.74	0.7548
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	31.17	0.7181

Compare expression of checked genes

Potri.003G000500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.