Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 821 / 0 Major facilitator superfamily protein (.1) AT1G33440 735 / 0 Major facilitator superfamily protein (.1) AT3G54140 361 / 2e-117 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G69850 360 / 1e-116 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT5G01180 352 / 7e-114 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G27040 342 / 3e-110 Major facilitator superfamily protein (.1.2) AT3G21670 339 / 7e-109 Major facilitator superfamily protein (.1) AT2G02040 327 / 3e-104 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G68570 325 / 3e-103 Major facilitator superfamily protein (.1) AT2G26690 322 / 2e-102 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229000 [exp] 1045 / 0 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 806 / 0 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G064100 [exp] 410 / 2e-136 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 393 / 6e-130 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 380 / 1e-124 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.010G034300 [exp] 369 / 3e-120 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.014G157500 [exp] 356 / 3e-115 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 353 / 3e-114 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.002G225500 [exp] 352 / 1e-113 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024457 [exp] 818 / 0 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10007437 [exp] 816 / 0 AT1G59740 842 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 396 / 1e-130 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 373 / 5e-122 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10013276 [exp] 358 / 3e-116 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 357 / 9e-116 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10032876 [exp] 354 / 2e-114 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10037217 [exp] 352 / 4e-114 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10032252 [exp] 350 / 3e-113 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10002793 [exp] 349 / 3e-113 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.003G000800.1 pacid=42786151 polypeptide=Potri.003G000800.1.p locus=Potri.003G000800 ID=Potri.003G000800.1.v4.1 annot-version=v4.1 ATGGAGGCAAGGAGATATGATAACAAGGGAGAGAGCAAGTGTGTGATTGGTGAGGAGATTACTGTTGATTGGAGAGGCAAACCCTCCAATCCCAACAAGC ATGGAGGCATGAGAGCCGCAGCATTTGTTCTTGGGCTTCAAGCATTTGAGATAATGGCAATAGCTGCTGTAGGGAACAACCTCATAACATATGTGATAAA TGAGATGCACTTCCCTTTGTCAAAGGCTGCAAACACAGTGACAAATTTTGTTGGAACTATCTTTATCCTGGCCCTCCTTGGTGGTTACCTCTCGGACTCT TATCTTGGGTGTTTCTGGACCATGCTCATCTTTGGTTTTGTCGAACTTTCTGGTTTCATATTACTATCAGTTCAAGCTCATCTTCCCCAACTAAAGCCAC CCCAGTGTAACATGTTAACTGATGGAGAAAACTGTGTGGAAGCGAAAGGAGTCAAGTCCTTGATCTTTTTTGTAGCCCTGTACTTGGTGGCATTAGGGAG TGGATGTGTTAAACCCAACATGATTGCTCATGGAGGTGACCAGTTCAATCAAAGCAATCCAAAGCAATCCAAGAAGCTCTCTACCTACTTCAATGCTGCC TATTTTGCTTTCTCCATGGGTGAACTTTTTGCTCTAACACTTCTTGTATGGATACAAACGCATTCTGGGATGGATGTTGGTTTTGGAGTCTCTGCAGCTG TCATGGCCATGGGATTGATCAGCTTGGTTTCCGGTAATCTATATTACAGGAACAAACCCCCTCAAGGAAGCATTTTCACCCCCATAGCTCAGGTTTTTGT GGCTGCAATATTAAAGAGAAAGCAAATTTGTCCATCTAATCCACAGATGCTTCATGGAAGCCAAAACAGTGTGCTCGATAATGGCATAGTAGCCCCATCT GCTGACTCTGGCAGTCTAGCTCATACACAAAGGTTCAGGTTCTTGGACAAGGCCTGCATCAAAATTGAAGATGGGACCAATATAAAGGAGAGTCCATGGA GATTGTGCAGTGTCACTCAAGTGGAGCAAGTGAAGATACTGATCTCAGCCATTCCAATTTTTGCCTGCACCATCGTTTTTAACACCATCTTAGCTCAACT CCAGACATTCTCAGTCCAACAAGGTGGTGCCATGGACACCCAACTCGCCAAATCCTTCCATATCCCTCCTGCTTCACTTCAATCCATCCCTTACATTATA CTCATCATTGTAGTCCCTCTATATGACACTTTCTTTGTACCTTTAGCAAGAAAAATCACCGGTCATGAATCAGGAATATCTCCTCTGCAGAGGATAGGAG CCGGCCTCTTTTTTGCTACCTTTTCCATGGTTTCTGCTGCCATTATGGAGAAGAAGAGAAGGGATGCAGCTGTAGATTCCAACAAGATACTGTCCATCTT TTGGATCACCCCGCAGTTTCTAATATTTGGATTGTCAGAAATGCTGACTGCCGTTGGTCTCATAGAGTTCTTTTACAAACAGTCTTTAAAAGGGATGCAA GCATTTTTAACAGCTATCACCTATTGCTCCTATTCATTTGGGTTTTACTTGAGCTCCTTACTTGTTTCTTTGGTAAACAAGATCACCTCCTCAAGTTCTT CAAATCAAGGTTGGCTCAGTGACAATGATCTCAACAAAGACAGATTGGATCTTTTCTACTGGATGCTAGCAGTCCTTAGCTTCCTCAACTTCCTTAGCTA CCTATTTTGGGCTAGATGGCATTCTTACAGTCCAATATCTCTATTAACCACAACACAACAAGAGACGCTTGGTGATGATCACTTAAACAACTATGGCTTC ATCAACTCTTCAAAACATGGTGTGGATGAAAGCATGCCATAA
AA sequence Show only first row Show all	>Potri.003G000800.1 pacid=42786151 polypeptide=Potri.003G000800.1.p locus=Potri.003G000800 ID=Potri.003G000800.1.v4.1 annot-version=v4.1 MEARRYDNKGESKCVIGEEITVDWRGKPSNPNKHGGMRAAAFVLGLQAFEIMAIAAVGNNLITYVINEMHFPLSKAANTVTNFVGTIFILALLGGYLSDS YLGCFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMLTDGENCVEAKGVKSLIFFVALYLVALGSGCVKPNMIAHGGDQFNQSNPKQSKKLSTYFNAA YFAFSMGELFALTLLVWIQTHSGMDVGFGVSAAVMAMGLISLVSGNLYYRNKPPQGSIFTPIAQVFVAAILKRKQICPSNPQMLHGSQNSVLDNGIVAPS ADSGSLAHTQRFRFLDKACIKIEDGTNIKESPWRLCSVTQVEQVKILISAIPIFACTIVFNTILAQLQTFSVQQGGAMDTQLAKSFHIPPASLQSIPYII LIIVVPLYDTFFVPLARKITGHESGISPLQRIGAGLFFATFSMVSAAIMEKKRRDAAVDSNKILSIFWITPQFLIFGLSEMLTAVGLIEFFYKQSLKGMQ AFLTAITYCSYSFGFYLSSLLVSLVNKITSSSSSNQGWLSDNDLNKDRLDLFYWMLAVLSFLNFLSYLFWARWHSYSPISLLTTTQQETLGDDHLNNYGF INSSKHGVDESMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59740			Major facilitator superfamily ...		Potri.003G000800 [exp]	0	1
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	1.41	0.8220
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	3.46	0.7970
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.010G127600 [exp]	4.89	0.7769
					Potri.008G087700 [exp]	7.34	0.7935
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	10.95	0.7864
AT4G01700			Chitinase family protein (.1)		Potri.014G111800 [exp]	12.04	0.7799	CHI2.1
AT5G65660			hydroxyproline-rich glycoprote...		Potri.002G108100 [exp]	12.48	0.7452
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	12.64	0.6957
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.001G020900 [exp]	13.41	0.7385
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.009G098700 [exp]	15.19	0.7503

Compare expression of checked genes

Potri.003G000800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.