Plant FIBer expression Database

Potri.003G000900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49880 829 / 0 mitotic checkpoint family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G228900
[exp]
1012 / 0 AT5G49880 682 / 0.0 mitotic checkpoint family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024456
[exp]
517 / 5e-174 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1)
Lus10007438
[exp]
336 / 8e-112 AT5G49880 317 / 3e-105 mitotic checkpoint family protein (.1)
Lus10007439
[exp]
220 / 3e-65 AT5G49880 199 / 1e-57 mitotic checkpoint family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05557 MAD Mitotic checkpoint protein
Representative CDS sequence
>Potri.003G000900.2 pacid=42786289 polypeptide=Potri.003G000900.2.p locus=Potri.003G000900 ID=Potri.003G000900.2.v4.1 annot-version=v4.1
ATGATACTAAGAACTCCACCGGCAAAGCGAGCAAGAGGAGGAGCCGCCGACGCAAATGCAAGACCTATCATCGAGAGCCCCCAATCGGAGCACCACCGCG
ATAATCATCTAGTTATCTACGAAGACAACAACACTCCGCCGCTCCAACACGAACAATTCCTCTGCACCTACCAGTGCCGCCAATTGGTTAAATCGGATTT
TATAGACGCGTTGAGTAGCGCCGAGAAGCAAGTTCAGGATTACCAGTCTAAATTACAAGAAATCAATGAAAATTTCACCATATCTGAAGGTGAGAGGAAG
AAGTTTCGAGATAAATTGTTGCAGACAGAGCAACAACTTGCTGCTGCCAAAGGACGCGAACATGCTCTTCAGCAACAACTTCTTAAGGAAGTTAATGTTA
ACCAAGAAAGGTTCAAGAAACAGTTAGAATCACATGCTAACCTTGAGGTTAAGCTTGAAAATGAAAAGAACCTGCGCCAGAAAGCTGAATCCTCAGCAGC
TTCTGCTGAAGAGAAAGCAAGTGTTTTAGAGGGAAAACTTGGCCATCTTTCTGAAAGCATAGAAAGGGAGAAAAAGCGTCTCAATACTGAGCTTGCGCAG
CTGAATAGAGAATCAAAGCATTCTGTTTCTAGAATAAGGGCAGATCTAGAAAAAATGGAATGCAGGGCCAAGCATGCTGAGAAAGAATCAGAGCTGTGGA
AGGAGCAGCTAGAAGATCTGAAAAGGCAACTTACGGAGTGCTCGCATCAAAGAAGTGAGTTGGAGAAGAAATTATCAAGTTTCACTTTTCAAGAAGGTTC
TTCTACTGATAGCAACATTTTGGTTAAACATCTACAAGAAGAGCTTAGAAATTTTGAGACTGAAGTGAGGGAAGCAAGAAAGATAAGATCTTCCCATGAA
AGCATTGAGTTATTGAAGGAGAAATTGCTGGAAGAAAAGGGCCGCAGAGAAAGAGCAGAGTCAGAGTCATCTAAGTTACTAGAATTTGAGTTAAATATGA
AGAAGCTGGAGGATGAAATGTCTTCTTGGAAGTTAGCAATAGAGGATATTCCTGGTGTGTCATCTTATGATGATATACCTGTTAAATTTGCAGCATTACA
GAAAGAGGTGATTGATAACATGATGAAGGCAGGTGAGGCAAATGCACATTTCAAACAAATGGAGGTGGCCTTGGAAACTGCTCAACTTGGTAAACAAAAT
GCTGAAGCTGAGGCTGCATTGGCCAAAGAGAAGGCAGAAGCATTGAAATTGGAGGTCAAACAGATTGAATTGATGCTCTCTATGGTTACTGAAGAAAGAG
ATAGGTTGAAAAATGTTGTCAATGAATTAAAGAGGCCAAAGAATGATCAAGGAGGGGATGAAGCAGCCAGTGGAGTTCTTCTTCAGGAACTTGAATCATC
TCTTGCACAGAAGGAATTTTGTATTAAAGAATTGGAGAGTAATCTACATGCACAGAAAGAAGTCAATAGTCGCCAATTGGAAGAAATAAAGACACTTAAT
GATATGCTAAATAATGAAGCTAGAAGAATTAAGTCATTGGAAAGGGAGAGTGACCGGCTTCGTGCAGAGATCTCCCTATTGGAGTCTAAGCTAGGTCATG
GTGACTTCTCTGCTGCAAATACAAAAGTGCTGAGAATGGTTAATACACTTGCAGTTGATAATGAGGCCAAACAAACTATTGAGGCTTTACGAACTGAGTT
GCAGAAGACCAAGGAGAAGTTGCAAGCTGTAGAAGAATTGAAGAGTCAGTCAGGTGATGCGGGCAAGCTGGTGGACTCCTATATCTCTGGGAAGATAACA
CAATTAAAAGAACAAATTGCAACTCTTGAAAAACGTGAAGAAAGATACAAGACTGTTTTTGCTGATAGAATCTCTGTGTTTCGAAGGGCATGCTGTGAAC
TTTTTGGCTACAAGATTGTAATGGATGAACACCAGCGTTCTAATGGAATTCCAGTTACTCGGTTTACCCTGCAATCAGTCTACGCCCAAAGTGATGATGA
GAAACTTGAGTTTGAATATGAATCAGGGAATACAAACATTTTGGCTAACGATTACACATCACAGCCCGACATATCCCGTCAGGTGGATATATTTATTCGC
AAGATGAACTCAATTCCAGCTTTCACGGCCAACCTGACAGTGGAGTCTTTCAACAGACGAACTCTATCGTAA
AA sequence
>Potri.003G000900.2 pacid=42786289 polypeptide=Potri.003G000900.2.p locus=Potri.003G000900 ID=Potri.003G000900.2.v4.1 annot-version=v4.1
MILRTPPAKRARGGAADANARPIIESPQSEHHRDNHLVIYEDNNTPPLQHEQFLCTYQCRQLVKSDFIDALSSAEKQVQDYQSKLQEINENFTISEGERK
KFRDKLLQTEQQLAAAKGREHALQQQLLKEVNVNQERFKKQLESHANLEVKLENEKNLRQKAESSAASAEEKASVLEGKLGHLSESIEREKKRLNTELAQ
LNRESKHSVSRIRADLEKMECRAKHAEKESELWKEQLEDLKRQLTECSHQRSELEKKLSSFTFQEGSSTDSNILVKHLQEELRNFETEVREARKIRSSHE
SIELLKEKLLEEKGRRERAESESSKLLEFELNMKKLEDEMSSWKLAIEDIPGVSSYDDIPVKFAALQKEVIDNMMKAGEANAHFKQMEVALETAQLGKQN
AEAEAALAKEKAEALKLEVKQIELMLSMVTEERDRLKNVVNELKRPKNDQGGDEAASGVLLQELESSLAQKEFCIKELESNLHAQKEVNSRQLEEIKTLN
DMLNNEARRIKSLERESDRLRAEISLLESKLGHGDFSAANTKVLRMVNTLAVDNEAKQTIEALRTELQKTKEKLQAVEELKSQSGDAGKLVDSYISGKIT
QLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEHQRSNGIPVTRFTLQSVYAQSDDEKLEFEYESGNTNILANDYTSQPDISRQVDIFIR
KMNSIPAFTANLTVESFNRRTLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49880 mitotic checkpoint family prot... Potri.003G000900
[exp]
0 1
AT3G28730 NFD, SSRP1, ATH... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.004G124000
[exp]
1.00 0.8275 ATHMG.2
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.009G163400
[exp]
1.41 0.7859
AT4G19900 alpha 1,4-glycosyltransferase ... Potri.015G122200
[exp]
4.89 0.7696
AT1G15280 CASC3/Barentsz eIF4AIII bindin... Potri.003G056500
[exp]
12.64 0.7655
AT1G07990 SIT4 phosphatase-associated fa... Potri.009G014700
[exp]
12.84 0.7168
AT1G03350 BSD domain-containing protein ... Potri.015G050700
[exp]
13.60 0.7643
AT3G20920 translocation protein-related ... Potri.001G257500
[exp]
14.28 0.7260
AT3G54630 unknown protein Potri.001G208700
[exp]
15.00 0.7334
AT5G51570 SPFH/Band 7/PHB domain-contain... Potri.012G129000
[exp]
17.14 0.7356
AT2G21600 ATRER1B endoplasmatic reticulum retrie... Potri.005G228900
[exp]
17.49 0.7104 RER1.4

Potri.003G000900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.