Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARF1.11
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59750 896 / 0 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT3G61830 617 / 0 ARF ARF18 auxin response factor 18 (.1) AT2G46530 598 / 0 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 588 / 0 ARF ARF9 auxin response factor 9 (.1.2) AT5G62000 549 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G35540 483 / 9e-164 ARF ARF14 auxin response factor 14 (.1) AT1G34410 469 / 3e-158 ARF ARF21 auxin response factor 21 (.1) AT1G34310 463 / 3e-156 ARF ARF12 auxin response factor 12 (.1) AT1G35520 459 / 3e-154 ARF ARF15 auxin response factor 15 (.1) AT1G34390 458 / 3e-154 ARF ARF22 auxin response factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228800 [exp] 1206 / 0 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.014G100100 [exp] 653 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 648 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 635 / 0 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 616 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.012G106100 [exp] 543 / 0 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 521 / 2e-175 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 496 / 1e-166 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.014G135300 [exp] 493 / 4e-166 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007440 [exp] 1030 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 1016 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 624 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032541 [exp] 541 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 538 / 0 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032413 [exp] 457 / 1e-157 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10033598 [exp] 387 / 5e-124 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 387 / 2e-123 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10030240 [exp] 374 / 7e-123 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10010969 [exp] 382 / 4e-122 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.003G001000.2 pacid=42786220 polypeptide=Potri.003G001000.2.p locus=Potri.003G001000 ID=Potri.003G001000.2.v4.1 annot-version=v4.1 ATGGTATCTGCAGCTATGAATCATACCTCCGGAGGAAACCCCCATCCAGGGGGATGCAATGATGCTTTGTACAAAGAACTATGGCATGCCTGTGCTGGAC CTCTTGTCACTCTTCCTTGTGAAGGGGAGCGAGTTTATTATTTTCCTCAAGGTCACATGGAACAGCTTGAAGCATCAATGCATCAGGGGATGGAGCAGCA AATGCCCTCATTTAACCTTCCATCTAAAATTCTGTGTAAAGTGGTTAATGTTCAGCGCAGGGCTGAACCTGAAACAGATGAAGTTTATGCCCAGATAACA CTGCTTCCTGAACCAGATCAAAGCGAGGTTACTAGTCCTGATCCTCCACTCCCAGAACCTGAAAGATGCACGGTCCATTCATTTTGCAAGACACTTACTG CTTCTGACACAAGCACTCATGGTGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGTCTGCCTCCTTTGGACATGTCTCAGCAGCCACCTTGGCAGGA GTTGGTTGCAACTGATCTGCATGGCAATGAGTGGCATTTTCGACACATTTTTCGAGGTCAACCAAGGCGTCACCTGCTCACAACAGGGTGGAGTGTCTTT GTTAGCTCAAAAAAGTTAGTTGCGGGTGATGCATTCATCTTCCTAAGGGGAGAAAATGGCGAGCTTCGTGTGGGAGTAAGGAGGCTCATGAGGCAACAGA CAAATATGCCATCTTCTGTTATATCTAGCCAAAGCATGCATCTAGGGGTTCTTGCTACTGCTTCTCATGCCATTGCGACTGGAACCCTTTTTTCTGTCTT CTACAAGCCAAGAACAAGTAGGTCTGAGTTCATTGTAAATCTTAACAAGTATATTGAAGCTCAAAACCACAAGCTTTCTGTAGGGATGAGGTTTAAGATG AGATTTGAGGGTGAGGAAGTTCCTGAACGAAGGTTTAGTGGCACCATTGTTGGCGTTGGAGATAATATATCATCGGGATGGGCTGATTCTGAGTGGAGAT CATTAAAGGTCCATTGGGATGAACCTTCTTCCATCTTGCGTCCAGAGAGAGTATCACCATGGGATTTGGAACCTCTTGTTGCAACTACTCCTTCGAACTC CCAACCTATGCAGAGGAACAAGCGGCCACGGCCATCTGTCTTGCCCTCACCAACAGCCAATCTTTCTGCACTTGGTATGTGGAAACCTTCGGTTGAGTCT TCAGCTTTCTCATATGGTGAATCACAACGTGGACGAGACCCTTATCCATCACCCAATTTCTCTACCACTGCAAAGGCCAACTCTCTTAGCTTCTGTGGCA ATAGTCAAGTGACCAGTGTTTCGCCGAATTCAATGTATCGGCCTAACCAAGTGGAAAGTGTCACAGATTCTTTTGCTCCAGTTGTAAACAAAGATTTGGG AGAAAGGAGACAGGGTACTGGGATTGGCTACAGACTTTTCGGGATTCAACTTATTGACAATTTCAATGCAGAAGGAACTTCACCAGTGGTTACTGTGTCT GGAACAGTGGGCAATGATCGCCCGGTTGTCTCTTTAGAGGCTGAGTCTGATCAGCATTCTGAGCCTGAGAAATCATGTCTGAGATCTCATCAGGAGTTGC AAAGTAGGCAAATCAGGAGCTGCACAAAGGTTCACATGCAAGGCGTTGCTGTTGGAAGAGCTGTTGATTTGACACAGTTTGAACACTATGAAGACCTGCT GAGGAAGCTGGAGGAGATGTTTGATATCGAAGGTGAGCTCAGTGGATCCACGAAGAAATGGCAGGTTGTGTATACTGATAATGAAGATGACATGATGAAG GTTGGGGATGATCCATGGCATGAGTTCTGCAGCATGGTGAAGAAGATTTTTATCTATGCATCTGAAGAAGTCAAGAGGCTGTCACCCAAGATTAAACTTT CAGGTGATGAAGAGATCAAAGGAGATAGTGCCAATGCTAATGCCGATGCATCTGTTAACACAGAGGACCGCTCATCTGTCGTTGGGCCTGGATGCTGA
AA sequence Show only first row Show all	>Potri.003G001000.2 pacid=42786220 polypeptide=Potri.003G001000.2.p locus=Potri.003G001000 ID=Potri.003G001000.2.v4.1 annot-version=v4.1 MVSAAMNHTSGGNPHPGGCNDALYKELWHACAGPLVTLPCEGERVYYFPQGHMEQLEASMHQGMEQQMPSFNLPSKILCKVVNVQRRAEPETDEVYAQIT LLPEPDQSEVTSPDPPLPEPERCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVF VSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVNLNKYIEAQNHKLSVGMRFKM RFEGEEVPERRFSGTIVGVGDNISSGWADSEWRSLKVHWDEPSSILRPERVSPWDLEPLVATTPSNSQPMQRNKRPRPSVLPSPTANLSALGMWKPSVES SAFSYGESQRGRDPYPSPNFSTTAKANSLSFCGNSQVTSVSPNSMYRPNQVESVTDSFAPVVNKDLGERRQGTGIGYRLFGIQLIDNFNAEGTSPVVTVS GTVGNDRPVVSLEAESDQHSEPEKSCLRSHQELQSRQIRSCTKVHMQGVAVGRAVDLTQFEHYEDLLRKLEEMFDIEGELSGSTKKWQVVYTDNEDDMMK VGDDPWHEFCSMVKKIFIYASEEVKRLSPKIKLSGDEEIKGDSANANADASVNTEDRSSVVGPGC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	0	1	Pt-ARF1.11
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	2.23	0.8341	Pt-ECA3.3
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	3.00	0.8103
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.004G228800 [exp]	3.46	0.8065	Pt-ARF1.12
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Potri.011G107400 [exp]	4.24	0.7768	Pt-KU70.1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	5.00	0.7510
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	5.47	0.7658
AT1G50730			unknown protein		Potri.001G356700 [exp]	6.32	0.8043
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.010G233600 [exp]	7.21	0.7697
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Potri.001G126700 [exp]	8.94	0.7388
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	10.09	0.8027

Compare expression of checked genes

Potri.003G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.