Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CLC.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49890 950 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 759 / 0 Voltage-gated chloride channel family protein (.1) AT5G40890 622 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 617 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G26240 412 / 2e-132 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228300 [exp] 1108 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 923 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 914 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 776 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 760 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 635 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 446 / 2e-145 AT5G26240 1149 / 0.0 chloride channel D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007433 [exp] 999 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 993 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 736 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 634 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 428 / 1e-138 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 412 / 1e-132 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 182 / 2e-51 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 134 / 1e-35 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.003G001500.1 pacid=42786789 polypeptide=Potri.003G001500.1.p locus=Potri.003G001500 ID=Potri.003G001500.1.v4.1 annot-version=v4.1 ATGGAGGAGGATCATAGTAGTAGAGAAGGGAATGGATTTGAGATAGAAGATGATGATGATAAGGAACACAGTGTGTCAATGTTGAGAGAGCCGTTTCTTG TTAGGAATATAAAGAATAATACTTCACAGATTGCCATTGTTGGTGCCAATACCTGCCCTATTGAAAGCCTTGATTATGAGATTGCTGATAATGAACTTTT TAGACAAGACTGGAGGTCTCGAAAGAAGGTTGAGATATATCAGTATGTTGTCCTCAAGTGGACACTTGCTCTCCTCATTGGGTTAGGTACAGGGCTTGTC GGCTTTTTCAATAACCTTGCTGTTGAAAACATAGCTGGTTTCAAACTTCTGTTGACAAACAATCTCATGCTTGAGAACAAGTACTATCAGGCATTTGCAA CTTATGCTGGTTGCAACGTGGTTTTGGCTATTGCTGCTGCAGCCCTCTGTGCTTACGTTGCTCCTGCAGCAGCAGGCTCTGGTATACCTGAGGTTAAAGC ATACCTCAATGGTGTAGATGCTCCTTCTATTTTGGCTCCTGCTACCCTCTTTGTAAAGATTTTCGGGTCCATATTTGGAGTTGCTGCTGGATTTGTTGTT GGTAAAGAAGGACCCATGGTACATACTGGTGCTTGCATAGCCTCCTTACTTGGACAGGGTGGTTCTCGCAAGTATCATTTGACATGGAAATGGTTGAGAT ACTTCAAAAATGATCGAGACCGGCGAGATTTGGTTACATGTGGTTCTGCTGCTGGTGTAGCAGCTGCCTTCCGTGCTCCTGTTGGCGGGGTCTTATTTGC CCTTGAAGAAGCTGCTTCCTGGTGGAGGAGTGCCCTTCTTTGGAGGACGTTCTTTACGACAGCTGTAGTTGCAGTCGTATTGAGAGGTCTCATAGATTTT TGCCGATCTGGAAAATGTGGGCTATTTGGACAAGGAGGTCTGATCATGTTTGACGTAAATTCTAGAAAAGCCTTTTACAGCACCCCAGATCTACTAGCAG TTGTGTTCCTTGGAGTGATAGGAGGCGTTTTCGGAAGCCTTTACAACTATTGTGTCGACAAGGTTCTTCGCACGTACAGCCTCATCAATGAGAGGGGTCC TTCGTTTAAGATCCTGCTTGTTATTGTCATTTCCCTTTTGACCTCTTGTTGCTCCTATGGTCTCCCATGGCTTTCGAAGTGCATTCCCTGTCCCCCTCAC CTGGCCGAGAAATGCCCAACTGAAGGTCGCTCTGGCAACTTCAAGAATTTCCAGTGTCCACCAAACCACTACAACGACCTTGCTTCCCTCGTTTTCAACA CCAATGATGATGCCATCCGCAACCTATTCACTTCCGGTAGTGAAAAGGAATTTCACCTCTCCACCCTTATGGTTTTCTTCTTTGCTATTTATTGCCTTGG CATTGTTACTTACGGCATTGCTGTTCCCTCTGGGCTCTTCATCCCCGTCATTCTTGCTGGGGCCTCTTATGGGCGTCTTATTGGAACAATGCTTGGCCCT CTGTCTAATCTTGATGCGGGTCTCTGTGCCCTCCTTGGAGCTGCCTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTCTCTGTGTCATACTTCTTG AACTTACTAATGATCTGCTTATGCTTCCACTAATGATGCTAGTGCTCCTCATTTCAAAAACAGTGGCCGATAGTTTCAACAAGGGTATTTATGATCAAAT GGTGAGAATGAAAGGATTTCCGTACATGGAAGCCCATGCAGAACCATACATGAGACATCTTGTTGCAAGTGATGTTGTTTCTGGTCCATTAGTTTCATTC TCTGGGATTGAAAAAGTAGGGAACCTGTTGCTTGCTTTGAAAGTAACAGGGCATAATGGATTCCCTGTGATTGATGAGCCGCCTTGTTCAGATGCTCCAG AATTGTGTGGGCTTGTCTTGAGGTCTCATCTGCTTGTGTTGCTAAGAGGAAAGAAATTTACAAAACAGAGAGTAAAGACGGGATCAGGGATCATGAAGAG TTTCAAGGCACATGACTTTGCAAAGGCTGGATCAGGCAAAGGGGTGAAGCTGGAGGATTTGGAGATCACAGAGGAGGAGATGGAGATGTATGTTGATCTC CATCCTATTACTAACACATCTCCATACACCGTGGTTGAAACAATGTCTCTAGCTAAAGCTGCTGTTCTCTTTCGCGAACTTGGCCTTAGACACTTGTGTG TGGTGCCGAAGACACCAGGGAGGCCTCCTATTGTCGGAATCCTGACTCGGCATGACTTCACACCAGATCATATACTGGGGCTTTACCCACATATTAAACC TCACAAGTAG
AA sequence Show only first row Show all	>Potri.003G001500.1 pacid=42786789 polypeptide=Potri.003G001500.1.p locus=Potri.003G001500 ID=Potri.003G001500.1.v4.1 annot-version=v4.1 MEEDHSSREGNGFEIEDDDDKEHSVSMLREPFLVRNIKNNTSQIAIVGANTCPIESLDYEIADNELFRQDWRSRKKVEIYQYVVLKWTLALLIGLGTGLV GFFNNLAVENIAGFKLLLTNNLMLENKYYQAFATYAGCNVVLAIAAAALCAYVAPAAAGSGIPEVKAYLNGVDAPSILAPATLFVKIFGSIFGVAAGFVV GKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDLVTCGSAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGLIDF CRSGKCGLFGQGGLIMFDVNSRKAFYSTPDLLAVVFLGVIGGVFGSLYNYCVDKVLRTYSLINERGPSFKILLVIVISLLTSCCSYGLPWLSKCIPCPPH LAEKCPTEGRSGNFKNFQCPPNHYNDLASLVFNTNDDAIRNLFTSGSEKEFHLSTLMVFFFAIYCLGIVTYGIAVPSGLFIPVILAGASYGRLIGTMLGP LSNLDAGLCALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLMMLVLLISKTVADSFNKGIYDQMVRMKGFPYMEAHAEPYMRHLVASDVVSGPLVSF SGIEKVGNLLLALKVTGHNGFPVIDEPPCSDAPELCGLVLRSHLLVLLRGKKFTKQRVKTGSGIMKSFKAHDFAKAGSGKGVKLEDLEITEEEMEMYVDL HPITNTSPYTVVETMSLAKAAVLFRELGLRHLCVVPKTPGRPPIVGILTRHDFTPDHILGLYPHIKPHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	0	1	CLC.3
AT1G02960			unknown protein		Potri.002G208058 [exp]	1.41	0.8866
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	3.00	0.8755
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	3.46	0.8326
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	4.89	0.8668
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	5.00	0.8472
AT5G63220			unknown protein		Potri.008G044100 [exp]	9.16	0.8451
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	9.48	0.7854
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	11.53	0.8440
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.014G109100 [exp]	12.00	0.8221
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G034000 [exp]	12.64	0.7519

Compare expression of checked genes

Potri.003G001500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.