Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10280 543 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 379 / 3e-130 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 373 / 1e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 365 / 8e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 363 / 7e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68390 361 / 1e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 330 / 1e-110 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 327 / 2e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 315 / 9e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 308 / 4e-99 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228100 [exp] 669 / 0 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 380 / 8e-131 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 370 / 6e-127 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 366 / 5e-125 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 366 / 8e-125 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 366 / 1e-124 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 362 / 2e-123 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 357 / 2e-121 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 349 / 2e-118 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024468 [exp] 562 / 0 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 560 / 0 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 525 / 0 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10013427 [exp] 521 / 0 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 371 / 1e-126 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 371 / 1e-126 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 372 / 1e-124 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 355 / 7e-121 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 352 / 2e-119 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 350 / 4e-118 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.003G001700.1 pacid=42784757 polypeptide=Potri.003G001700.1.p locus=Potri.003G001700 ID=Potri.003G001700.1.v4.1 annot-version=v4.1 ATGGCAAGGAATAGAGGGGATAAAGAAGAAGGACCTGAAAAGCTCATGGGTTTGCTTAAACTGGTTCAAATATTGTCGTTGTTGGTAATTTTTGTTGCTG GTGTGATTCTAGGCTTAGCTACTAGTTCTCACATCAACCGTTACTTTACTTCGCAAGCACAGTTGTTTCTCACTAACAACATTGCTTCAGCAAAGCTATC TGATAATAATTGTACAGTTGTGAAGCCTTGTGAGAAGGTTGATTTTTTGAATATGGAGAGGTTTGTTCATCCAGACAACGTGATTCATAGCATGACTGAC GATCAGGTCTTTTGGAGGGCTTCTCTGTTGCCACAAAAGAAAGGGTATCCCTTCGATAGAGTACCTAAAGTTGCTTTCATGTTTTTGACTAGAGGACCTT TGCCACTGCTGCCTTTGTGGGAGAGGTTCTTTAGGGGTCATGGCCAGTATTTCTCCATATATGTTCATACTCCTCATGATTATGTGCTCAATGTTTCCAG TGATTCCCCATTCTATGGAAGAATGATTCCAAGCAAGGATGTTGAATGGGGATCAGTATCACTGGTTGATGCTGAGAAGCGCCTTCTAGCCAATGCCCTA CTGGATTTCTCAAATGAACGTTTTGTTCTTCTGTCTGAGAGCTGCATCCCAATCTACAATTTCCCTACTGTCTACAAGTATCTCATTCGTTCAGAATACA GCTTTGTCGAGTCATATGATGAACCCACCCGCTATGGACGCGGCCGCTACAGCCGGAAAATGCTTCCTGATATTCATCTGTACCAATGGAGGAAAGGGTC ACAGTGGTTTGAGATCCAACGTGACCTGGCTGTTTATATAGTTTCAGACACCAAGTACTACACTATCTTCAAGAAATACTGTAGGCCTGCTTGCTATCCT GACGAGCATTACATTCCAACTTACCTGAACATGTTCCACGGGTCACTTAATTCAAACCGGAGCGTGACATGGGTTGATTGGTCCATCGGGGGACCGCACC CAGCAAGATACGGTGGTGGTAATATTACCGAAGACTTTATACAGTCCATTCGGAATAATGGCACACAATGTTCCTATAATTCAGAAATGACATCTGTTTG CTACCTCTTTGCTCGGAAGTTCGCTCCAAGTGCATTGGTTCCTTTGCTTAGCCTAACCTCGACAGTAATGGAATTTTAA
AA sequence Show only first row Show all	>Potri.003G001700.1 pacid=42784757 polypeptide=Potri.003G001700.1.p locus=Potri.003G001700 ID=Potri.003G001700.1.v4.1 annot-version=v4.1 MARNRGDKEEGPEKLMGLLKLVQILSLLVIFVAGVILGLATSSHINRYFTSQAQLFLTNNIASAKLSDNNCTVVKPCEKVDFLNMERFVHPDNVIHSMTD DQVFWRASLLPQKKGYPFDRVPKVAFMFLTRGPLPLLPLWERFFRGHGQYFSIYVHTPHDYVLNVSSDSPFYGRMIPSKDVEWGSVSLVDAEKRLLANAL LDFSNERFVLLSESCIPIYNFPTVYKYLIRSEYSFVESYDEPTRYGRGRYSRKMLPDIHLYQWRKGSQWFEIQRDLAVYIVSDTKYYTIFKKYCRPACYP DEHYIPTYLNMFHGSLNSNRSVTWVDWSIGGPHPARYGGGNITEDFIQSIRNNGTQCSYNSEMTSVCYLFARKFAPSALVPLLSLTSTVMEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	0	1
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.001G356100 [exp]	3.46	0.7450	Pt-ERF3.1,ERF40
AT3G19950			RING/U-box superfamily protein...		Potri.005G090500 [exp]	5.83	0.6814
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.008G018600 [exp]	8.06	0.6868
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.008G108300 [exp]	10.53	0.7809
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	10.77	0.7871
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.002G163300 [exp]	14.49	0.6584
AT5G49060			Heat shock protein DnaJ, N-ter...		Potri.010G013200 [exp]	15.16	0.7518
AT4G10925			Nuclear transport factor 2 (NT...		Potri.001G089600 [exp]	17.32	0.6887
AT5G41560			unknown protein		Potri.001G099200 [exp]	18.54	0.7311
AT1G03760			Prefoldin chaperone subunit fa...		Potri.017G012500 [exp]	19.97	0.6736

Compare expression of checked genes

Potri.003G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.