Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45290 551 / 0 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) AT2G39200 485 / 8e-167 ATMLO12, MLO12 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) AT1G61560 466 / 2e-159 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) AT1G11310 465 / 4e-159 PMR2, ATMLO2, MLO2 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) AT2G17430 414 / 1e-139 NTA, ATMLO7, MLO7 NORTIA, MILDEW RESISTANCE LOCUS O 7, Seven transmembrane MLO family protein (.1) AT5G65970 414 / 4e-139 ATMLO10, MLO10 MILDEW RESISTANCE LOCUS O 10, Seven transmembrane MLO family protein (.1) AT2G33670 412 / 4e-139 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) AT2G17480 400 / 3e-133 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) AT1G42560 389 / 7e-131 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1) AT2G44110 354 / 1e-116 ATMLO15, MLO15 MILDEW RESISTANCE LOCUS O 15, Seven transmembrane MLO family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129700 [exp] 559 / 0 AT3G45290 505 / 1e-175 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Potri.007G064200 [exp] 492 / 1e-169 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.009G011900 [exp] 474 / 4e-162 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.008G041400 [exp] 468 / 5e-160 AT1G61560 768 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.010G220500 [exp] 447 / 9e-152 AT1G61560 743 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.005G254300 [exp] 428 / 1e-144 AT1G11310 461 / 3e-157 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) Potri.002G007000 [exp] 428 / 2e-144 AT1G11310 448 / 7e-152 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) Potri.016G088000 [exp] 424 / 5e-144 AT1G61560 576 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.004G050000 [exp] 421 / 3e-143 AT2G39200 490 / 4e-170 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036121 [exp] 616 / 0 AT3G45290 542 / 0.0 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Lus10040388 [exp] 471 / 7e-161 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10023506 [exp] 463 / 3e-157 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10036519 [exp] 457 / 2e-155 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10041410 [exp] 454 / 3e-154 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10019630 [exp] 436 / 4e-147 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10030729 [exp] 416 / 2e-140 AT2G33670 628 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) Lus10022096 [exp] 414 / 2e-138 AT2G17480 687 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10013211 [exp] 400 / 4e-134 AT2G33670 623 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) Lus10036120 [exp] 369 / 1e-121 AT1G61560 599 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03094 [poplar] [flax] Mlo Mlo family
Representative CDS sequence Show only first row Show all	>Potri.003G002500.2 pacid=42784985 polypeptide=Potri.003G002500.2.p locus=Potri.003G002500 ID=Potri.003G002500.2.v4.1 annot-version=v4.1 ATGGCTGAGGGAGGAGCAGGCAGTACAGGCTCAACCCCATACCGCTCTTTGCAAGACACCCCCACCTGGGCTCTGGCAACCGTTTGCTTCATCTTCATCT TCACCGGCATATTCATTGAGTACCTGATCCACCTCCTTAGCCACTGGCTGAAAAAAAGTAGAAAGACTGCCTTGTATGAGGCCTTGGAGAAGCTCAAATC AGTGCTTATGGTGCTGGGGTTCATGTCACTCATTTTGACGGTAACTCAAAGATCCATCATCAAAATCTGCATACCAGACAAGGTTGCAAACAGGATGCTA CCATGCCGTCATACCATAACCAAAACCACCAAAGCAACACAAGAAAGGATCTTGGCAGCTGAATCCGGCTCGGATTATTGTGGCTCAAGGGGAATGACAT CTCTTATATCAGAAAGCGGGGTCAATCAGCTCAATATATTCATCTTTGTGATGGCGATCATGCAAATAGTCTACACCGTTCTTACTATGGCCTTAGGAAG GGCAAAGATGAGGAGTTGGAAAGCTTGGGAGCGAGAGACTCAAACAGTGGAATACCAAGCTGCCACTGATCCTAATCGCTTTCGGTACACAAGGCAAACG ACATTTGCACGTAGACACATGGGTTCCTTTGCAGCAACATCAACCCAACTCTGGATTAAGTGCTTTTTCCGTCAATTCTTCAGTTCAGTGGCAAAAGTTG ACTATCTAACTCTGCGCCATGGATTCCTGGCGGCTCATTTGCCCAATAACAGTTCCTTCAATTTCCAAAGGTACATACAACGATCGCTGGATTATGATTT CAAAGAAATAGTCGGCATTAGTCCCTGGATGTGGTTTTTAGTCGTCATCTTCATGCTTGTGGATGTCCATGGTTGGCATGTCTATCTTTGGGTATCATTT ATCCCATTGCTAATAGTGCTGGTTCTTGGAACCAAACTTGAAGTAGTAGTAGCAGAAATGGCTCTTGAAATCCATGATCAAAGTAGTGTAATCAAGGGAG CTCCTCTAGTACGACCAAATAACAGTCTCTTCTGGTTCAGTCATCCAAAATATGTCTTGCCTCTTATACACTATACTCTATTCATGAACGCGTTCGAGCT CGCATTTTTTGTTTGGGTCACGCTGCAATTTGGGATAAAATCTTGCTACCATGAAAGGGTAGAGATCATCGTTGTTAGGGTTGTATTAGCGGTGACTGTT CAAATCATGTGTAGTTACATTACTCTTCCTCTGTATGCCCTAGTAACCCAGATGGGGTCACAATTTAAGGGTGCAATCTTGGAAGAGCAAACAGCTAACG CTATCAAGCAATGGCACGGTGGAGTCAAGAAGAAGATGAAGAAAAAAGGACAAGATTTTTCACTATCTAATAATCACTCTTATTCCTCCCCTATATCAAC TAGCAACCGAACCATGGATTCCCCCTCAGATAACAACCATCATCATAGCCAAAATGATTCTCAAGATGACATCCCTTCTCTTTTAAGAAATCCAACTTTA AGTGATATCACTTCATTTCAAGGCCAAATTGAGATAGTTGAAGGTGGTGCTCGAGAAATTTCCCGACATGGGGTTCCATCCACTGTGATTGAAATAGCCG GTGTGCCTGATCGAATCAAGAATCAAACATAG
AA sequence Show only first row Show all	>Potri.003G002500.2 pacid=42784985 polypeptide=Potri.003G002500.2.p locus=Potri.003G002500 ID=Potri.003G002500.2.v4.1 annot-version=v4.1 MAEGGAGSTGSTPYRSLQDTPTWALATVCFIFIFTGIFIEYLIHLLSHWLKKSRKTALYEALEKLKSVLMVLGFMSLILTVTQRSIIKICIPDKVANRML PCRHTITKTTKATQERILAAESGSDYCGSRGMTSLISESGVNQLNIFIFVMAIMQIVYTVLTMALGRAKMRSWKAWERETQTVEYQAATDPNRFRYTRQT TFARRHMGSFAATSTQLWIKCFFRQFFSSVAKVDYLTLRHGFLAAHLPNNSSFNFQRYIQRSLDYDFKEIVGISPWMWFLVVIFMLVDVHGWHVYLWVSF IPLLIVLVLGTKLEVVVAEMALEIHDQSSVIKGAPLVRPNNSLFWFSHPKYVLPLIHYTLFMNAFELAFFVWVTLQFGIKSCYHERVEIIVVRVVLAVTV QIMCSYITLPLYALVTQMGSQFKGAILEEQTANAIKQWHGGVKKKMKKKGQDFSLSNNHSYSSPISTSNRTMDSPSDNNHHHSQNDSQDDIPSLLRNPTL SDITSFQGQIEIVEGGAREISRHGVPSTVIEIAGVPDRIKNQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	0	1
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G047900 [exp]	1.41	0.8810
AT4G38380			MATE efflux family protein (.1...		Potri.009G143400 [exp]	2.82	0.8467
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	3.87	0.8519
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G118800 [exp]	6.92	0.8397
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.002G175200 [exp]	10.95	0.8398	Pt-CYP78.1
AT5G50760			SAUR-like auxin-responsive pro...		Potri.001G060400 [exp]	10.95	0.8223
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147400 [exp]	11.61	0.8025
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192000 [exp]	12.24	0.7801
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.003G096300 [exp]	13.22	0.8325
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	13.41	0.8080

Compare expression of checked genes

Potri.003G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.