Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10270 647 / 0 GRP23 glutamine-rich protein 23 (.1) AT3G49240 246 / 2e-69 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60980 225 / 2e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G60960 213 / 2e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28380 171 / 4e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28340 171 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 137 / 1e-32 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 134 / 3e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12700 130 / 1e-30 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G12775 129 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227800 [exp] 1055 / 0 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.012G015400 [exp] 237 / 5e-66 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 151 / 3e-37 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 140 / 2e-33 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G038400 [exp] 136 / 6e-33 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 132 / 2e-31 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 127 / 5e-30 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 127 / 5e-30 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 126 / 1e-29 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002990 [exp] 766 / 0 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10024469 [exp] 478 / 2e-148 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10018109 [exp] 255 / 2e-72 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022406 [exp] 251 / 3e-71 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024470 [exp] 173 / 2e-48 AT1G10270 209 / 3e-62 glutamine-rich protein 23 (.1) Lus10023863 [exp] 135 / 6e-32 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 122 / 8e-28 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 122 / 8e-28 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035577 [exp] 115 / 5e-27 AT5G12100 363 / 8e-119 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039056 [exp] 119 / 6e-27 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G002950.4 pacid=42784960 polypeptide=Potri.003G002950.4.p locus=Potri.003G002950 ID=Potri.003G002950.4.v4.1 annot-version=v4.1 ATGTCCCTCTATCTCCTCCTCCTCCTCCGCCGCTCCTCCGCCACTTTAACAATCAACAATCACCCTCTAATCCGTGCTCTTCACCACCTCAGTCTTTCTC CCCTCGTTCATACCCCAAACCTTAGCCCTCCAATCTCGACCTCCCCACTCCTTCCACCGTCCCGCACATTCGCCTTCTCCTCCGCCGAAGAAGCCGCAGC AGATCGTAGGAAAAGAAGGCGTCGTCTCCGAATCGACCCTCCATTCCAAGCAATGCAAAGCAACCCTCCCCCTCCTGACCCCAACGCTCCTCGCCTCCCT GACTCCACAAACGCATTAACTGGCCATCGCCTTAATCTCCACAATCGGGTCCAATCCCTAATCCGCGCTTATGATCTCGACACTGCTTCCCTTGTCGCTC GCAATTCTGTTTATTCCCGAACTCGCCCCACTGTTTTTACTTGCAATGCCATCATAGCTGCTATGTATCGCGCGAAAAGATATGATGATGCAGTTTCGCT ATTTAAATTCTTTTTTGAAAAACATAATATAGTGCCTAATGTTGTTTCTTACAATAATTTGATCAATGCGCATTGTGATGAGGGAAAAGTTGATTTGGGG CTTGAGATTTATAGGCGTATAATTGAGACAGCTCTGTTTTCACCATCGTCAGTGACCTATAGGCATTTGACTAAAGGGTTGATTGATGCTGGGAGGATTG AGGATGCCGTTGCTTTGTTGAGGGAGATGTTGGCTAAAGGGCATGGTGCAGATTCGCTAGTTTATAATAATGTTATCAAAGGGTTTTTGGAGTTGGGGAA CTTGGAGAAGGCTAATGAGTTTTTCGATGAGTTGAAAGAGAGGTGCTTGGTTTATGATGGAGTGATTAATGCCACGTTTATGGATTGGTGGTTTAAGCAA GGGAAGGATAAGGAGGCTATGGGAAGTTACAAGTCGTGGCAGGATAAAAATTTTAAGGTGGTGCCTGCTACTTGTAATACCATTTTGGAGGTTTTGGTTA GATATGGGAAGAAAGAGGCTGCTTGTGCTTTGTTTGAGCATATGCTGGATAATCATACCCCACCGACTCAACAAGCCGTAAACTCTGATACTTTTAATAT AATGGTGAATGAGTGCTTCAAGGAAGCAGGGTTTGAGGAGGCAATTCATACATTTAAAAAGGCGGGGACAAAGTCAGGGTCTAAGCCTTTTCAAATGGAT GTTGCGGGGTACAACAATATTATCGCAAGATTTTGCGAGAATGGGATGATGGAGCACGCGGAGGAGTTTTTTGCAGCATTGTTGGCCAAGTGCTTGACCC CTGATGTCGTGACTTTTAGGACTTTAATTGATGCATATTTAAAGAGGGAAGAGATTGATGATGTTTTGAGAACGCTCAATAAAATGGCAGATGCTGGTTT GAGAGTTGTGGCAAGCTTTGGGACTAGGGTATTTGGTGAGTTGATTAAGAATGGCAAGGAAGTGGAGTCTGCAGAGATTTTGACCAAAATGGGAAACAAA GATCCTAAACCAGACTCCTCAATCTATGATGTCGTGGTTCGAGGGCTTTGTAGTGCTGGGGAATTAGATGCAAGCAAGGATATGCTGGACCAAATGATTA AATACGGTGTTGGTATTCCACCTGCATTGAAGGAATTCTTAATTGAGGTTTTTGGAAATGCTGGACGGGCTAGTGAGATTAAGAGTGTTTTGGATGAAAG TAAGTGGATTAACATTTCAAGACCTGCTTATGCAAGACAGCCTCGAAGTCAACATGAAACTGCTCAAATGGCAAGTGGGCAGCCATTAGGGCCTTCGCCA ATGATGGGAAGATCAGTTTCAAGTGAACCTCAGATTGCAAGACCACAGTCCTTCGGTGTCCATCCAATGTCAAGACAAACAGAATTAGGATCTCCTCAGA TGACAGGGCAGCTATCACTAGGATCTCATAATAAGCAACAGCCATCAGAATTCCTTCATATGGATCAACAACATCCATTGAGACCTTATCAAGGGCAACA ATCTTCATGGTCTTCTCAACATGAACCTGCTCAAATGGCAAGTGGGCAGCCATTAGGGCCTTCTCCAATGACACGAAGATCAGTTTCAAGTGAACCTCAG ATTGCAAGATCAGAGTCTTTTTGTGTCCATCCAATGTCAGGACAGACACAATTAGGATCTCCTCAGATGATAGGGCGGCAGTCACTAGGATCTCATAATA GGCAACAGCCATCAGAATTCCATAATATGGATCAGAAACATCCATCAGGATTCCATAATATGGACCAGCAACATCCATTGAGACCTTATCAAGGGCAACA ATCTTCATGGTCTTCTCAACATGAACCTGCTCAAATGGAAAGTGGGCAGCCATTAGGGCCTTCTCCAATGACAGGAAGATCAGTTTCAAGTGAGCCTCAG ATTGCAAGATCACAGTCCTTTGGTGTCCATCCAATGTCAGGACAGACACAATTAGGATCTCCTCAGATGACAGGGCAGCCATCACTAGGATCTCATAATA GGCAACAGCCATCAGAATTCCATAATATGGATAAGAAACTTCTATCAGGATTACATAATATGGATCAGCAACATCCGTTGAGACCTTATCAAGATACAAC AGCAGGACAACAATCTTCATGGTCTTCTCAACATGAACCTGCTCAAATGGCAAGTGGGCAGCCATTAGGGCCTTCTCCGATGACAGGAAGATCAGTTTCA AGTGAACCTCAGATTGCCAGATCACAGTCTTTTGGTGTCCATCCATTGTCAGGTCAGACACAATTAGGATCTCCTCAGATGACAGGGCAGCCGTCAATAG GATCTCATAATAGGCAACAGCCATCAGAATTCCTTAATATGGATCAGAAACATCCATTGGGATTACATAATATGGATCCTCCGATGACAGGAAGATCAGT TTCAAGTGAATCTCAGATTGCCAGATCACAGTCCTTTGGTGTCCATCCAATGTCAAGACAAGCACATTTAGGATCTCCTCAGATGACAGGGCAGCCTTCA CTAGGATCTCATAATAGGGAACAGCCATCAGAATTCCATAACATGGACCAGATACATCCATCGGGATTACATGATATGGATTGGCAACCTCCATTGAGAC CTTATCAAGGGCAACAATCTACATGGTCATCCCAAACAATAGGCCAGCATCCGTCGCGGTCATTCCAAGCAGCAGGCCAGCATCCGTCACAGTCTTCTCA AGCAGCAGGCCAGCATCCGTCATGGTCTTCTCAGACAGGACAGCATCCGTTATGGTCTTCTAAGACTGGACAGCATCCGTCATGGTCCTCTCACACAGGA GAGCAGCAGCCGTCATGGTCCTCTCAAACAGGAGGTCAGCAGCAATCACAGTCCTCTCAAAGTAGGGGACAGCAGGCATCATGGTCATTTCAAGCAGCAG GCCAGCATCTGTCACGGTCTTCTCAAGCAGCAGGCCAGCATCTGTCACGGTCTTCTCAAGCAGCAGGCCAGCATCCGTCATGGTCTTCTCAGACAGGACA GCATCCGTCATGGTCCTCTCACACAGGAGAGCAGCAGGCATCATGGTCCTCTCAAAGTAGGGTACAACAGGCATCATGGTCCAGTAATATGGAACAGCAG CCATCAGGAACCTCGCATGTGATTGAAAGCCATCCAAATGAATCTCCAGAGATGTCAGGACAGGTACCATTTGAATCCTCAAAGAATGGAGGTCAATATT CTTATGGATCACCTGCAGTGGTCAGACACCATCCTGCAGGATCCTCTCAGATCGTTGGACAACACGAATGGCAAGACAACCAGCAGCTGCCAAATGGACC TCCAGACATGGCTGAAGAGTATTCGTCAGCAGCCCTTGAATGGCAACACAGCCACCGGCAGGCAGCAGCATGA
AA sequence Show only first row Show all	>Potri.003G002950.4 pacid=42784960 polypeptide=Potri.003G002950.4.p locus=Potri.003G002950 ID=Potri.003G002950.4.v4.1 annot-version=v4.1 MSLYLLLLLRRSSATLTINNHPLIRALHHLSLSPLVHTPNLSPPISTSPLLPPSRTFAFSSAEEAAADRRKRRRRLRIDPPFQAMQSNPPPPDPNAPRLP DSTNALTGHRLNLHNRVQSLIRAYDLDTASLVARNSVYSRTRPTVFTCNAIIAAMYRAKRYDDAVSLFKFFFEKHNIVPNVVSYNNLINAHCDEGKVDLG LEIYRRIIETALFSPSSVTYRHLTKGLIDAGRIEDAVALLREMLAKGHGADSLVYNNVIKGFLELGNLEKANEFFDELKERCLVYDGVINATFMDWWFKQ GKDKEAMGSYKSWQDKNFKVVPATCNTILEVLVRYGKKEAACALFEHMLDNHTPPTQQAVNSDTFNIMVNECFKEAGFEEAIHTFKKAGTKSGSKPFQMD VAGYNNIIARFCENGMMEHAEEFFAALLAKCLTPDVVTFRTLIDAYLKREEIDDVLRTLNKMADAGLRVVASFGTRVFGELIKNGKEVESAEILTKMGNK DPKPDSSIYDVVVRGLCSAGELDASKDMLDQMIKYGVGIPPALKEFLIEVFGNAGRASEIKSVLDESKWINISRPAYARQPRSQHETAQMASGQPLGPSP MMGRSVSSEPQIARPQSFGVHPMSRQTELGSPQMTGQLSLGSHNKQQPSEFLHMDQQHPLRPYQGQQSSWSSQHEPAQMASGQPLGPSPMTRRSVSSEPQ IARSESFCVHPMSGQTQLGSPQMIGRQSLGSHNRQQPSEFHNMDQKHPSGFHNMDQQHPLRPYQGQQSSWSSQHEPAQMESGQPLGPSPMTGRSVSSEPQ IARSQSFGVHPMSGQTQLGSPQMTGQPSLGSHNRQQPSEFHNMDKKLLSGLHNMDQQHPLRPYQDTTAGQQSSWSSQHEPAQMASGQPLGPSPMTGRSVS SEPQIARSQSFGVHPLSGQTQLGSPQMTGQPSIGSHNRQQPSEFLNMDQKHPLGLHNMDPPMTGRSVSSESQIARSQSFGVHPMSRQAHLGSPQMTGQPS LGSHNREQPSEFHNMDQIHPSGLHDMDWQPPLRPYQGQQSTWSSQTIGQHPSRSFQAAGQHPSQSSQAAGQHPSWSSQTGQHPLWSSKTGQHPSWSSHTG EQQPSWSSQTGGQQQSQSSQSRGQQASWSFQAAGQHLSRSSQAAGQHLSRSSQAAGQHPSWSSQTGQHPSWSSHTGEQQASWSSQSRVQQASWSSNMEQQ PSGTSHVIESHPNESPEMSGQVPFESSKNGGQYSYGSPAVVRHHPAGSSQIVGQHEWQDNQQLPNGPPDMAEEYSSAALEWQHSHRQAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	0	1
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	2.23	0.9065
AT4G01400			unknown protein		Potri.014G105900 [exp]	3.00	0.8622
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	3.16	0.8726
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.003G090900 [exp]	3.46	0.8538
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	5.65	0.8617
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	7.14	0.8346
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	8.06	0.8383	Pt-LON_ARA_ARA.1
					Potri.016G052901 [exp]	8.48	0.7942
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	8.48	0.8346
AT2G45000		EMB2766	EMBRYO DEFECTIVE 2766, structu...		Potri.014G057000 [exp]	8.77	0.8510

Compare expression of checked genes

Potri.003G002950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.