Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18530 481 / 2e-170 Protein of unknown function (DUF707) (.1) AT4G12840 439 / 5e-154 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G11170 352 / 6e-119 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 337 / 3e-113 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT3G27470 249 / 2e-79 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 248 / 7e-79 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 247 / 1e-78 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT3G26440 244 / 6e-78 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G08040 243 / 3e-77 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 243 / 5e-77 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227700 [exp] 692 / 0 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.019G053000 [exp] 452 / 2e-159 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 418 / 1e-145 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 364 / 3e-124 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 358 / 6e-122 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.009G011000 [exp] 248 / 2e-79 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.010G047200 [exp] 248 / 8e-79 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 248 / 1e-78 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 247 / 2e-78 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041107 [exp] 384 / 4e-132 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006728 [exp] 360 / 1e-122 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10036434 [exp] 359 / 6e-122 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10038303 [exp] 343 / 2e-115 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10018456 [exp] 335 / 1e-112 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10002141 [exp] 349 / 5e-111 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10011228 [exp] 326 / 7e-107 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10002991 [exp] 271 / 2e-89 AT4G18530 265 / 6e-87 Protein of unknown function (DUF707) (.1) Lus10008748 [exp] 266 / 9e-88 AT4G12840 294 / 7e-99 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 256 / 9e-82 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [poplar] [flax] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Potri.003G003100.1 pacid=42787190 polypeptide=Potri.003G003100.1.p locus=Potri.003G003100 ID=Potri.003G003100.1.v4.1 annot-version=v4.1 ATGAAGGCTCTTAACTGTGCGTCTGCACCACCAGATCCTAAGAAAGGATCATGCCTCTGCAGTCTCCTCATTGCAGTTTCTATGATATGTAGCATTTACT TTGTTGGTTCTGCATTTGTTGGGAAGCAGTACAAGGAAAGACTGAATGCATGGAAATTGATTGAGGCGATGCAGAAATCTGATGAATGCAAGGATCGTTG CAGGCCTTCTGGAAGTGCGGCATTGCCTCAAGGCATAGTTAACGAGAAATCTAACTATAAAATGCAGCCTTTATGGGGCCCTTCTTTGAACGATGACAAT CCACAACCTTCAGCGAGCTTGCTAGCAATTGCAGTTGGAATAAAGCAAAAGGAAATAGTGGACCGAATTGTTACAAAGTTTCCTTTAAGTGATTTTGTTG TGATGCTTTTTCATTATGATGGTGTTGTGGACAAATGGAGAGATTTATCATGGAGTGACAGTGCCATCCATGTATCTGCAGTAAATCAAACAAAATGGTG GTTTGCCAAGCGTTTCCTGCATCCTGATATAGTTGCTGAATACAATTATATATTTCTTTGGGATGAAGACCTTGGAGTTGAGAATTTTAATCCAAGACGA TATCTGTCAATTGTTAAAGAGGAGGGACTAGAAGTATCACAGCCAGCACTTGATCCTGCTAGATCTACCATTCATAATCCAATTACTACACGTACAAGGA ACTCCAGGGCGCACAGGAAAATATTGAAGCTCAAAGGCAACGGAAGGTGTTATAACAATAGCACTTTACCTCCGTGCACAGGATGGGTGGAAATGATGGC ACCTGTCTTCTCAAAGGCAGCTTGGCGATGTACATGGTACATGATCCAGAATGACTTGATTCATGCGTGGGGCCTGGATAGAAAACTTGGTCATTGTGCA CAAGGTGACTGGACAAAAAATGTTGGCGTGGTTGATGCTGAGTATGTAGTTCATCTTGGTCTTTCGACCCTTGGCGTCTTTAATGGAAGTGAGGTACTAC TGTCCGAGTCCAAGGAAGTTGATAAAAGACCCCAAGTGAGGACACAGTCATATGTTGAGATGAACATCTTCCACAAGAGATGGGAAGATGCGGTGAATGA GGACAGATGTTGGGTTGATCCATATCAACAGTTTGCCAACCAAACCAGATACTGA
AA sequence Show only first row Show all	>Potri.003G003100.1 pacid=42787190 polypeptide=Potri.003G003100.1.p locus=Potri.003G003100 ID=Potri.003G003100.1.v4.1 annot-version=v4.1 MKALNCASAPPDPKKGSCLCSLLIAVSMICSIYFVGSAFVGKQYKERLNAWKLIEAMQKSDECKDRCRPSGSAALPQGIVNEKSNYKMQPLWGPSLNDDN PQPSASLLAIAVGIKQKEIVDRIVTKFPLSDFVVMLFHYDGVVDKWRDLSWSDSAIHVSAVNQTKWWFAKRFLHPDIVAEYNYIFLWDEDLGVENFNPRR YLSIVKEEGLEVSQPALDPARSTIHNPITTRTRNSRAHRKILKLKGNGRCYNNSTLPPCTGWVEMMAPVFSKAAWRCTWYMIQNDLIHAWGLDRKLGHCA QGDWTKNVGVVDAEYVVHLGLSTLGVFNGSEVLLSESKEVDKRPQVRTQSYVEMNIFHKRWEDAVNEDRCWVDPYQQFANQTRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18530			Protein of unknown function (D...		Potri.003G003100 [exp]	0	1
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	4.00	0.8930
AT3G11690			unknown protein		Potri.006G200100 [exp]	4.69	0.8518
AT4G02830			unknown protein		Potri.005G208800 [exp]	6.48	0.8787
AT3G55060			unknown protein		Potri.008G047200 [exp]	7.74	0.8859
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.011G042900 [exp]	9.53	0.8636
AT4G26288			unknown protein		Potri.009G120300 [exp]	10.77	0.8684
AT1G47410			unknown protein		Potri.014G032300 [exp]	12.64	0.8214
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	13.03	0.8676
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	13.85	0.8597
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Potri.004G013700 [exp]	14.07	0.8583

Compare expression of checked genes

Potri.003G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.