Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1299 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 1106 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 1056 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 892 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227200 [exp] 1624 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.019G072800 [exp] 1282 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 895 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023340 [exp] 1257 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038471 [exp] 1232 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10002950 [exp] 1170 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10003517 [exp] 1153 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 874 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 0 / 1 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF04685 [poplar] [flax] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [poplar] [flax] Gal_mutarotase PF12215 [poplar] [flax] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Potri.003G003400.4 pacid=42784544 polypeptide=Potri.003G003400.4.p locus=Potri.003G003400 ID=Potri.003G003400.4.v4.1 annot-version=v4.1 ATGGTAAGAAGAGATACTAGGATCTCCACTTCCTTGCAAGCCCTTTATAGCCTGCAGTTTCAGTCTTCAAACCAAACCGTCTACACAAGCGATCCCACTT CTCTCCAGTCTCCAGGAAAGATGTTTGAGAGAAAGATATCAGGGAATGGTTTTGATGAAGAACAAGGAGAACCTTCAAATTATCCGGTGGACAAGGTTGA TGCTGGGAAACCTGCACCACTGACCTGGCAGCGGAAATTAGACGGGGATGAAACTGTCCTTTCGCAGTTCACTTTAAGTTTGCAAGAGAAACTTTTAATG GCCCCTATAGGTATTCGGCTATGGCGTCATATCCGAGAAGAAAATGCCAGAAAAAGGGGGGGTTTTTATATGGATCCATTTGCTAAGCGCAATGTGACAT CTTGTCTTGGCATTCCAGTAGGCGGTATTGGTTCAGGAAGCATTGGAAGAAGTTACAAAGGTGAATTTCAGCGTTGGCAACTGTTCCCTAGAATATGCGA AGAAAAACCTGTTTTAGCAAATCAATTTTCTATTTTTGTTTCGCGCTCAAATGGTAAAAAATATTCCAGTGTACTGTGCTCGAGGAGTCCAGATGTGCTT GAAGAAGCTGCAGGCTCAGGGATTGAATCTTGGGACTGGAATCTGAAGGGAAATAATTCCACATATCATGCTTTATACCCCAGGGCTTGGACTGTATATG AGGGCGAACCTGATCCAGAACTCAGGGTTGTTTGTCGTCAAATTTCACCTATTATTCCTCATAATTACAAAGAGAGCAGCTTCCCTGCATCAGTTTTTAC CTTCAAGCTCTACAATTCTGGGAAGACTTCTGCAGATGTCACCTTGCTTTTCACATGGGCAAATTCTGTTGGAGGGGTTTCTGAATTTTCTGGTCAGCAC CTCAACTCAACAAAAATGATGGAGGATGGTGTACATTGTGCACTTCTGAATCACAAGACAGCAAACGGGCTTCCCTCGGTATCCTTTGCAATCGCTGCAC AAGAGACTCCTGTTGTTCATGTCTCAAAATGTCCTTGCTTCGTGATATCTGGAAACTCACAAGGTGTCACAGCCAAAGAAATGTGGAATGAAGTAAAAGA GCATGGGTCCTTCGACAACCTCAACTCACCTGGAAAGCTGGTGCCTTCGGAACCAGGATCATCTATTGGGGCAGCCGTTGCAGCGACTTCAACAGTCCCA CCAGATGGTGTATGTACAGTTACTTTTTCATTGGCATGGGACTGCCCTGACGTAAAATTTGGGAGTGGAAGGACTTACCACAGGCGTTACACAAAATTCT ATGGTACTCATGGAGATGCTGCTGCAAATATTGCGCATGATGCTATTCTAGAGCATGGCCTTTGGGAGTCAGAGATAGAAGCCTGGCAAAGACCAATTCT TGAAGACAAGAGACTTCCTGAATGGTATGCTGGCACTCTCTTTAATGAGCTCTATTATCTTAATTCAGGGGGGACAGTTTGGACAGATGGATCCCCTCCA TTCCGTAGCTTAGCAACTATTGAAGGAAGTAAGTTTTCTCTCGACAGGGCAGGTTCCAACCTGGGCCATCAAGGTGATACTGCTGTTGACATTCTTGGAA GGATGACTTCTGCACTTGAGGAAATCCACACTCCTTTAACAACCAATTCTGCTTTTGGAACTAATTTACTACAAGAAGGAGAAGAAAATATTGGTCAATT CCTTTATCTAGAAGGGATCGAGTATCACATGTGGAACACCTATGATGTTCACTTTTATGCATCTTTCGCCTTCATTATGCTGTTTCCCAAACTTCAGCTC AGCATTCAAAGGGACTTTGCAGCGGCAGTTATGATGCATGATCCCAGTATGATGCCACTGCTACACGATGGGCAGCGTGTCCCCAGAAAGGTTATTGGAG CTGTCCCTCATGACATTGGGATCCATGACCCATGGTTTGAAGTAAATGCCTATAACCTCCACAACACTGATCGCTGGAAAGACTTGAATCCAAAATTCGT TCTCCAGGTTTACAGGGATGTGATTGCTACTGGAGACAAGAAGTTTGCACGAGCTGTTTGGCCATCAGTTTATGTTGCAATGGCTTATATGGATCAGTTT GACAGGGATGGTGATGGGATGATTGAGAACGACGGCTTTCCTGATCAGACATATGATACGTGGTCTTTGTCAGGGGTTAGTGCATATTGTGGTGGGCTAT GGGTGGCAGCCTTACAGGCTGCATCAGCCCTGGCATGGGAAGTAGGAGACAAGGATTCGGCAGAATATTTTTGGTGTAGGTTTCAGAAGGCAAAGATTGT GTATGGCAAGTTATGGAATGGTTCTTACTTCAATTATGACAACAGCGGTGGTATCAATAGCTCATCCATTCAAGCTGATCAATTGGCCGGACAATGGTAC GCACGAGCATGCGGACTTTCACCTATTGTTGACGAGGACAAAGCTCGATGTGCACTGGAGAAGATTTATAATTACAACGTCCTGAAGGTGCAGGATGGGA AACGAGGGGCCGTAAATGGGATGCTACCTGATGGAACAGTTGACTTGTCATGCCTACAGTCAAGAGAAATATGGTCCGGGGTCACATACGCAGTTGCTGC AACCATGATCCAGGAAGGCTTGACAGATATGGCATTTCATACTGCTAGTGGAGTCTACGAGGCTGTGTGGGCTGAACAAGGACTTGGATATTCCTTTCAA ACTCCTGAAGGTTGGAACACCACTGACCAGTATAGATCCTTATGCTACATGCGGCCTTTGGCCATCTGGGCAATGCAGTGGGCCTTATCAAGACCGGAAC TTCACCGGCAGGAAATGAAATTACAAGCCGGGGAAGACTCTGTGCCTGTGCACCATGCTGGCTTCGCCAAAGTTGCTCGTTTTCTCAAGTTGCCTCATGC CGAATCATCTAAAAGCCATTTCCAATCCTTGTTTGAGTATGCTACCACCAAGTTTGGTTACAGTTAA
AA sequence Show only first row Show all	>Potri.003G003400.4 pacid=42784544 polypeptide=Potri.003G003400.4.p locus=Potri.003G003400 ID=Potri.003G003400.4.v4.1 annot-version=v4.1 MVRRDTRISTSLQALYSLQFQSSNQTVYTSDPTSLQSPGKMFERKISGNGFDEEQGEPSNYPVDKVDAGKPAPLTWQRKLDGDETVLSQFTLSLQEKLLM APIGIRLWRHIREENARKRGGFYMDPFAKRNVTSCLGIPVGGIGSGSIGRSYKGEFQRWQLFPRICEEKPVLANQFSIFVSRSNGKKYSSVLCSRSPDVL EEAAGSGIESWDWNLKGNNSTYHALYPRAWTVYEGEPDPELRVVCRQISPIIPHNYKESSFPASVFTFKLYNSGKTSADVTLLFTWANSVGGVSEFSGQH LNSTKMMEDGVHCALLNHKTANGLPSVSFAIAAQETPVVHVSKCPCFVISGNSQGVTAKEMWNEVKEHGSFDNLNSPGKLVPSEPGSSIGAAVAATSTVP PDGVCTVTFSLAWDCPDVKFGSGRTYHRRYTKFYGTHGDAAANIAHDAILEHGLWESEIEAWQRPILEDKRLPEWYAGTLFNELYYLNSGGTVWTDGSPP FRSLATIEGSKFSLDRAGSNLGHQGDTAVDILGRMTSALEEIHTPLTTNSAFGTNLLQEGEENIGQFLYLEGIEYHMWNTYDVHFYASFAFIMLFPKLQL SIQRDFAAAVMMHDPSMMPLLHDGQRVPRKVIGAVPHDIGIHDPWFEVNAYNLHNTDRWKDLNPKFVLQVYRDVIATGDKKFARAVWPSVYVAMAYMDQF DRDGDGMIENDGFPDQTYDTWSLSGVSAYCGGLWVAALQAASALAWEVGDKDSAEYFWCRFQKAKIVYGKLWNGSYFNYDNSGGINSSSIQADQLAGQWY ARACGLSPIVDEDKARCALEKIYNYNVLKVQDGKRGAVNGMLPDGTVDLSCLQSREIWSGVTYAVAATMIQEGLTDMAFHTASGVYEAVWAEQGLGYSFQ TPEGWNTTDQYRSLCYMRPLAIWAMQWALSRPELHRQEMKLQAGEDSVPVHHAGFAKVARFLKLPHAESSKSHFQSLFEYATTKFGYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	0	1
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	2.00	0.9637	Pt-IFS1.43
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	4.00	0.9376
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	4.00	0.9601
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	4.47	0.9543
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	5.00	0.9539
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022500 [exp]	5.29	0.9475
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	6.70	0.9379	RD21.1
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G026325 [exp]	8.00	0.9472
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040700 [exp]	9.00	0.9461
AT3G16510			Calcium-dependent lipid-bindin...		Potri.001G070400 [exp]	9.48	0.9248

Compare expression of checked genes

Potri.003G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.