Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09600 702 / 0 Protein kinase superfamily protein (.1) AT1G57700 675 / 0 Protein kinase superfamily protein (.1) AT1G53050 647 / 0 Protein kinase superfamily protein (.1) AT1G33770 547 / 0 Protein kinase superfamily protein (.1) AT1G71530 543 / 0 Protein kinase superfamily protein (.1.2) AT1G54610 530 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50860 527 / 0 Protein kinase superfamily protein (.1) AT1G03740 523 / 9e-177 Protein kinase superfamily protein (.1.2) AT5G44290 513 / 2e-174 Protein kinase superfamily protein (.1.2.3.4) AT4G10010 488 / 3e-167 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226900 [exp] 1152 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 670 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 665 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 644 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 619 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G045500 [exp] 572 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 570 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 563 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G130000 [exp] 550 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025773 [exp] 641 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10008925 [exp] 628 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 624 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 618 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10000170 [exp] 566 / 0 AT1G09600 570 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 566 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 554 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 553 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 553 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001285 [exp] 523 / 5e-178 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G003700.2 pacid=42784608 polypeptide=Potri.003G003700.2.p locus=Potri.003G003700 ID=Potri.003G003700.2.v4.1 annot-version=v4.1 ATGGGCTGCATTTGCTCGAAAGTCAGTAGAGCCACTAAATATTTAGAGAGAAGAGTCAAAAGAAAAGAAACAACCAAGCCTGCCAAACGGTTAGTTTCTT TATCCAAAAGCGATGAAGTTGTGGTAGAGGTTGATGGTAATGCTAATGGTTCCACGGCTAGTTTGATATCCGATCAACCTGGAAATGATAATGCGGAGTC TACTCCAGTTTCATACGATGAAGGAGAGAAGAAGGAAAAAATCGAACAGGTTAATAATCATCAAAGGATTACTAGTATAGTGAGTATGAGCAATGGAGAG AGAGGAGCACAAGTTGTTGCTGGTTGGCCTTCTTGGCTGACCTCTGTGGCTGGAGAAGCAATCAATGGATGGGTGCCTCGAAGGGCAGATTCATTTGAGA AGTTGGATAAGATTGGACAAGGAACATATAGCAGTGTGTACAAAGCTCGTGATCTTGAAACAAATAAGACAGTGGCATTGAAGAAGGTGTGCTTTGCTAA TATGGATCCTGAAAGTGTTCGTTTTATGGCAAGAGAAATCATCATTTTGCGTAGGCTTGATCACCCAAATGTTATGAAGCTTGAGGGTGTCATTGCTTCA AGAATGTCTGGCAGTTTGTACCTTATATTTGAATATATGGAGCATGACCTTGCAGGGCTTTTGGCTTCACCAGGGATTAAATTCTCTGAAGCGCAGATTA AATGTTACATGCAACAGCTTCTTCATGGACTTGAACACTGCCACAATCGCGGGATATTGCACCGTGATATAAAGGGCTCAAATCTTCTGATTGACTCTAA TGGCAATCTCAAGATTGCTGATTTTGGACTGGCAACTTTTTTCTCTTCACCTCAGAAGCAGCCTCTAACAAGTCGGGTGGTTACATTGTGGTACAGACCT CCAGAGCTTTTGCTTGGTGCCACAGAATATGGAGTTTCTGTGGATCTATGGAGCACTGGTTGCATTCTTGCAGAATTGTTTGTTGGGAAGCATATCATGC CTGGAAGAACAGAGGTGGAGCAACTGCATAAAATCTTCAAACTTTGTGGGTCACCTTCTGATGAGTACTGGAAGAGATCAAAACTGCCGCATGCAACCAT TTTCAAACCTCAACATCCTTATAAACGTTGTGTTACTGAGACATTTAAGGACTTTCCTTCATCAGCTTTAGCCTTGCTAGATGTCCTTCTTGCTGTAGAA CCTGAGGCCCGTGGGACAGCTCTTTCAGCACTTGACAGTGAGTTCTTCACGACAAAGCCTCTTCCTTGTGATCCATCAACTTTGCCGAAACACCCACCAA CCAAGGAGTTTGACGTTAAGTTTCGGGATGAGGATGCTAGAAGGAGGAGAGCAGCTGGAGGTAAAGGGCGTGGATATGAATCAACTAGAAGGGGTTCAAA AGAAAGTAAAGTCATGCCAGCAGCTGATGCCAATGCGGAGTTGCAAGCATCCATACAGAAGCGACAAGGACAGTCTAAACAAATAAGCATTAGTGAAATT TACAATCATGAAGAGGATGGTGTTTCTCGCTCTCCCGTTGGGCCTGCTAAAGGAACAGCAAGAAATATTTACTCACATTCTGGCCAGTCGGTGCATCCTA TGAACCTTGGATCTTCACATAATATGAACATCAATGAAACTTTCAGGGCTCCTGGGCAAGACTTTATTTCTTCAAGGCAGGCTGCAGAGTTGAGAGCTCA GAGATCTTTCATTGAAAGGGGAGCGGTCCAGTTGTATGGATTTTCTAATTCAGTTGCAGTTAGAGGTGATTCACAGTTTCATGGTAGCAGTTCAACTAAT CTGAATTCGCACTGGCCAGAGGGGAGTTTTAATGCTAGATATAACAGTCTGGATGATTCCTCCCACGGTCTACCAGGCAGGCCAAACTTCTCGAATAAGA AGCCTGGTTTGGATTCTACAACGGGTTACCCAACAAAGAAAAGCCATGTCCACTACTCTGGACCATTGGTGCCTCGAGGAGGAAACATTGAGGAAATGCT CAAAGAGCATGAGAAACAAATCCAGCGAGCTGTGCGTAAAGCTCGTTTGGACAAGAACACCAGTGAAAGTGGACACACTGAATCACTATTTTATCACGGG AGGATAAATGGTAGATGA
AA sequence Show only first row Show all	>Potri.003G003700.2 pacid=42784608 polypeptide=Potri.003G003700.2.p locus=Potri.003G003700 ID=Potri.003G003700.2.v4.1 annot-version=v4.1 MGCICSKVSRATKYLERRVKRKETTKPAKRLVSLSKSDEVVVEVDGNANGSTASLISDQPGNDNAESTPVSYDEGEKKEKIEQVNNHQRITSIVSMSNGE RGAQVVAGWPSWLTSVAGEAINGWVPRRADSFEKLDKIGQGTYSSVYKARDLETNKTVALKKVCFANMDPESVRFMAREIIILRRLDHPNVMKLEGVIAS RMSGSLYLIFEYMEHDLAGLLASPGIKFSEAQIKCYMQQLLHGLEHCHNRGILHRDIKGSNLLIDSNGNLKIADFGLATFFSSPQKQPLTSRVVTLWYRP PELLLGATEYGVSVDLWSTGCILAELFVGKHIMPGRTEVEQLHKIFKLCGSPSDEYWKRSKLPHATIFKPQHPYKRCVTETFKDFPSSALALLDVLLAVE PEARGTALSALDSEFFTTKPLPCDPSTLPKHPPTKEFDVKFRDEDARRRRAAGGKGRGYESTRRGSKESKVMPAADANAELQASIQKRQGQSKQISISEI YNHEEDGVSRSPVGPAKGTARNIYSHSGQSVHPMNLGSSHNMNINETFRAPGQDFISSRQAAELRAQRSFIERGAVQLYGFSNSVAVRGDSQFHGSSSTN LNSHWPEGSFNARYNSLDDSSHGLPGRPNFSNKKPGLDSTTGYPTKKSHVHYSGPLVPRGGNIEEMLKEHEKQIQRAVRKARLDKNTSESGHTESLFYHG RINGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09600			Protein kinase superfamily pro...		Potri.003G003700 [exp]	0	1
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	4.00	0.7915
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	20.83	0.7308
ATMG00810		ATMG00810.1, OR...	DNA/RNA polymerases superfamil...		Potri.013G138801 [exp]	21.81	0.7310
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	26.98	0.7491
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Potri.009G120600 [exp]	27.76	0.7823
AT1G53035			unknown protein		Potri.011G119200 [exp]	39.19	0.7767
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	39.94	0.7350
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Potri.002G140600 [exp]	68.81	0.7438
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	82.99	0.7054
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.004G128701 [exp]	129.19	0.7147

Compare expression of checked genes

Potri.003G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.