Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09610 429 / 3e-153 Protein of unknown function (DUF579) (.1) AT1G33800 352 / 2e-122 Protein of unknown function (DUF579) (.1) AT4G09990 345 / 4e-120 Protein of unknown function (DUF579) (.1) AT1G71690 308 / 3e-105 Protein of unknown function (DUF579) (.1) AT1G67330 231 / 4e-75 Protein of unknown function (DUF579) (.1) AT1G27930 225 / 1e-72 Protein of unknown function (DUF579) (.1) AT2G15440 175 / 9e-53 Protein of unknown function (DUF579) (.1) AT3G50220 160 / 3e-47 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 156 / 1e-45 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT4G24910 114 / 8e-30 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226800 [exp] 487 / 4e-176 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 372 / 2e-130 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 369 / 4e-129 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 223 / 9e-72 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 220 / 6e-71 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 194 / 3e-60 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 193 / 8e-60 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 164 / 2e-48 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 159 / 8e-47 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005829 [exp] 346 / 5e-120 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 345 / 8e-120 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 257 / 2e-85 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 228 / 6e-74 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 228 / 1e-73 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 222 / 2e-71 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 221 / 7e-71 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 217 / 1e-69 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 171 / 2e-51 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 169 / 9e-51 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [poplar] [flax] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Potri.003G003801.1 pacid=42786470 polypeptide=Potri.003G003801.1.p locus=Potri.003G003801 ID=Potri.003G003801.1.v4.1 annot-version=v4.1 ATGAGGCCTAAAAGCCAGCAAATCTCCAACCTTAAGCTGCTCCTCCTTGGTGTCTTCCTTGCTTTCTTCCTGCTTTTTGTGTTACGATCAAGCATGTCAT CTTCCCAGGAAAGTTCATCTCCCACCGCTCAACCAAAAACCTCAGATTCCATGAAAGAAGCTAGAGCAACAAATTGCTCACAGGGATGTAGTAAGGTCCC ACGCTTCCTAACCCAAGCTCTCATTCACTACACAACCTCAACCATCACCCCACAGCAAACACAGAAAGAAATATCAGTGAGTGCCAAAATTTTAGAAAAG AAGTCTCCATGTAATTTCTTGGTTTTCGGCCTCGGTCATGATAGCCTTATGTGGAGTGCACTCAACTACGGTGGACGAACAGTTTTCCTTGAAGAAGATG AAGCTTGGATTGCGCAAATTAAACGCCGGTTTCCTATGTTAGAGTCTTATCACGTCACATATGACAGCAAGGTGAATCAAGCTAACAATCTCATGGAGGT AGGCAAGGGGCCTGAGTGCACAGCAATTAGTGATCCAAAGTTCTCTATGTGCCAGCTTGCCTTGAAAGGTTTGCCCAGTGAAGTTTATGAGATAGAATGG GACTTGATCATGGTTGATGCACCAACAGGGTACTATGAAGAGGCACCAGGGAGAATGACTGCCATATATACTGCCGGAATGATGGCAAGAAACAGGAAAG AAGGAGAGACCGATGTTTTTGTGCATGATGTGAACAGAGAGGTGGAAGATAAGTTCTCCAAGGCACTTCTTTGTGAAGGATATATGAAGAAACAAGTAGG GAGGTTAAGGCACTTTATCATTCCTAGCCACAGGGATGCCTTGGACAGACCTTTTTGCCCAGAGTAG
AA sequence Show only first row Show all	>Potri.003G003801.1 pacid=42786470 polypeptide=Potri.003G003801.1.p locus=Potri.003G003801 ID=Potri.003G003801.1.v4.1 annot-version=v4.1 MRPKSQQISNLKLLLLGVFLAFFLLFVLRSSMSSSQESSSPTAQPKTSDSMKEARATNCSQGCSKVPRFLTQALIHYTTSTITPQQTQKEISVSAKILEK KSPCNFLVFGLGHDSLMWSALNYGGRTVFLEEDEAWIAQIKRRFPMLESYHVTYDSKVNQANNLMEVGKGPECTAISDPKFSMCQLALKGLPSEVYEIEW DLIMVDAPTGYYEEAPGRMTAIYTAGMMARNRKEGETDVFVHDVNREVEDKFSKALLCEGYMKKQVGRLRHFIIPSHRDALDRPFCPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	0	1
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	2.44	0.9662
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	3.46	0.9396
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	3.74	0.9395
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	3.87	0.9533
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.011G132600 [exp]	4.47	0.9456
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	6.92	0.9229
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	7.48	0.9471
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	8.12	0.9269
AT5G42090			Lung seven transmembrane recep...		Potri.003G147700 [exp]	9.74	0.9113
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	10.00	0.9094

Compare expression of checked genes

Potri.003G003801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.