Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76680 558 / 0 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G76690 555 / 0 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G09400 477 / 3e-170 FMN-linked oxidoreductases superfamily protein (.1) AT2G06050 395 / 6e-137 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G18020 382 / 1e-133 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 382 / 1e-133 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004600 [exp] 735 / 0 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.013G102700 [exp] 585 / 0 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 572 / 0 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 570 / 0 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 567 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 563 / 0 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.006G142800 [exp] 389 / 2e-134 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 382 / 1e-131 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 376 / 9e-130 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001276 [exp] 559 / 0 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 547 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10013218 [exp] 541 / 0 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001274 [exp] 508 / 0 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 504 / 1e-179 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10028663 [exp] 390 / 5e-135 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 380 / 6e-131 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10030737 [exp] 251 / 6e-82 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00724 [poplar] [flax] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Potri.003G004200.1 pacid=42784902 polypeptide=Potri.003G004200.1.p locus=Potri.003G004200 ID=Potri.003G004200.1.v4.1 annot-version=v4.1 ATGGCAGCCAGCACCAACCCCATCCCTTTACTCACTCCATACAAAATGGGGAAATTCAACCTCTCTCACAGAGTTGTTATGGCACCATTAACAAGGAATA GATCCTACAACAACATGCCTCAACCACATGCCATCCTATACTATTCTCAACGCGCTACCAATGGAGGCTTCCTCATTTCCGAAGCAACTGTGGTTTCTGA CACAGCTCAAGGATATCCTGAAACACCTGGAATTTGGACTGAAGAGCAAGTGAAAGCATGGAAGCCAATTGTGGATGCTGTTCATGAGAAAGGTGGCATT TTGTTTTGCCAAATTTGGCATGTGGGTCGTGTCTCCACTTATGGGTTTCAGCCGAATGGGGAAGCTCCCATATCATGCACTGATAAAGGAGTGACACCAG GTCTTGACGGAGAAGACTGGTCACCTCCTCGTCGATTAAGAGCCGATGAACTTCCTCGCATTGTTAATGATTTCAGACTCGCTGCCCGCAACGCCATTGA AGCTGGATTTGATGGAGTTGAGATTCACGGGGCAAATGGTTACTTGATTGATCAGTTCCTTAAAGATCAAGTAAATGACAGAACTGATAATTATGGTGGG AGCTTGGAAAATAGGTGCCGCTTTCCATTGGAAATATTGGAAGCTGTAGTTGATGAAGTTGGAGCTGATAAAGTTGGCATGAGACTATCGCCATATGCTA ACTACATGGAAGCCGTTGATTCAAACCCAGAAGAACTTGGCCTTTACATGGCAAATGCATTAAACAAATTTGGTATTCTTTATCTCCATGTAATTGAGCC AAGAATGGTTAAAGCGAACGACATATATGAAACTCCTCACAGTCTACTTCCAATGAAAAATGCCTTTGAAGGGACTTTTATAGCTGCTGGAGGATACCGT AGAGATGATGGTAACAAGGCTATAGCTGAGAATTACGCAGATCTGGTGGCATTTGGAAGATTGTTTCTGGCTAATCCAGATTTGCCAAAACGATTTGAGT TAAATGCTCCTCTTAATAGGTACAACAGGAACACTTTCTACATTCCCGATCCTGTTGTTGGCTACACTGACTATCCTTTCCTTGATGTTCTGGCTTAA
AA sequence Show only first row Show all	>Potri.003G004200.1 pacid=42784902 polypeptide=Potri.003G004200.1.p locus=Potri.003G004200 ID=Potri.003G004200.1.v4.1 annot-version=v4.1 MAASTNPIPLLTPYKMGKFNLSHRVVMAPLTRNRSYNNMPQPHAILYYSQRATNGGFLISEATVVSDTAQGYPETPGIWTEEQVKAWKPIVDAVHEKGGI LFCQIWHVGRVSTYGFQPNGEAPISCTDKGVTPGLDGEDWSPPRRLRADELPRIVNDFRLAARNAIEAGFDGVEIHGANGYLIDQFLKDQVNDRTDNYGG SLENRCRFPLEILEAVVDEVGADKVGMRLSPYANYMEAVDSNPEELGLYMANALNKFGILYLHVIEPRMVKANDIYETPHSLLPMKNAFEGTFIAAGGYR RDDGNKAIAENYADLVAFGRLFLANPDLPKRFELNAPLNRYNRNTFYIPDPVVGYTDYPFLDVLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004200 [exp]	0	1
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.001G285800 [exp]	1.00	0.9169
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004600 [exp]	2.44	0.8716
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136800 [exp]	5.65	0.8376
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	6.48	0.8842
AT5G35370			S-locus lectin protein kinase ...		Potri.002G086500 [exp]	8.77	0.8610
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G381700 [exp]	9.21	0.8798	Pt-SRG1.3
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	11.48	0.8822	Pt-ATCNGC19.3
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.017G031700 [exp]	14.00	0.8578
AT3G19480			D-3-phosphoglycerate dehydroge...		Potri.014G022800 [exp]	14.59	0.8163
AT5G20110			Dynein light chain type 1 fami...		Potri.015G067800 [exp]	15.58	0.8670

Compare expression of checked genes

Potri.003G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.