Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52950 51 / 4e-07 Nucleic acid-binding, OB-fold-like protein (.1) AT5G08020 45 / 3e-05 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 43 / 0.0002 ATRPA70D Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061550 [exp] 448 / 3e-157 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G062301 [exp] 331 / 8e-117 ND / Potri.001G165480 [exp] 211 / 2e-67 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G320601 [exp] 142 / 3e-42 ND / Potri.001G165360 [exp] 137 / 7e-42 ND / Potri.016G107750 [exp] 47 / 6e-07 ND / Potri.018G065300 [exp] 49 / 2e-06 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042979 [exp] 61 / 3e-10 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10027612 [exp] 59 / 9e-10 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10036312 [exp] 56 / 1e-08 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 53 / 1e-07 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10040517 [exp] 53 / 1e-07 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 52 / 3e-07 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003025 [exp] 50 / 8e-07 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10017778 [exp] 49 / 1e-06 AT5G08020 75 / 3e-14 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10033436 [exp] 49 / 2e-06 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10010590 [exp] 45 / 4e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF16900 [poplar] [flax] REPA_OB_2 Replication protein A OB domain
Representative CDS sequence Show only first row Show all	>Potri.003G004401.1 pacid=42786496 polypeptide=Potri.003G004401.1.p locus=Potri.003G004401 ID=Potri.003G004401.1.v4.1 annot-version=v4.1 ATGGCTCTACCTATAAAACAGATTAAAAAATACAACTTCTACCCTTCATTACGAGCTAGGGCCTGTCGAGTTTGGATTGCTAAATTTAATGGTCAGCCAA GCAATTTTAATTGTGTTTTTGTTGACAATCAGGGTGGAGCTATTCAAGCTTTAGCTAAAACAAGGGATCTCCTAACATTTGCAGCAACAATTATTGAAGG AAATCACTATGAAATCAAAGGATTCTATACTTATGAAAACAGAGTAGTAAACACAGTTACTGTCCATGATGATGTAATTGATCTCAAATCTAACACAAAA ATTACAGGCATTGAAGCTATTACACCTCATGTTCCTAGATACTACTTCAATTTTATTGACTATGCACATATTCTGACCAAGTCAAAAGGCTCCAGAATTC TTACAGATGTCCTTGGAAGACTTAAAGCATTGCAGCCACTTGAACAAGTTATGGTTTGTGGACAGACGCTCGAAAATAAAAGAGAATTCATGCTTGAGAA CATTCGTGGTGAGGAGCTTCATATAACTCTTTGGGGTGATAGTGCCAGAGATTTTGATGAACTCGCTCTTCATAACCTACCATCTCCGGTTATCATTGCG TTTGCTGGATTTCGTGTCACAGAATTTAAGGGAAAACCAAATCTTAACAGTACAACCACCTCTCTTTGGTACTTCAATCCGGACATACCAGAATGCTTAG CATATAAACATTTCTTTGCACAACTACCCGTTGAAATACAACAACTCCCTTCATCATCGAATGTTGTTTATCGATAG
AA sequence Show only first row Show all	>Potri.003G004401.1 pacid=42786496 polypeptide=Potri.003G004401.1.p locus=Potri.003G004401 ID=Potri.003G004401.1.v4.1 annot-version=v4.1 MALPIKQIKKYNFYPSLRARACRVWIAKFNGQPSNFNCVFVDNQGGAIQALAKTRDLLTFAATIIEGNHYEIKGFYTYENRVVNTVTVHDDVIDLKSNTK ITGIEAITPHVPRYYFNFIDYAHILTKSKGSRILTDVLGRLKALQPLEQVMVCGQTLENKREFMLENIRGEELHITLWGDSARDFDELALHNLPSPVIIA FAGFRVTEFKGKPNLNSTTTSLWYFNPDIPECLAYKHFFAQLPVEIQQLPSSSNVVYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.003G004401 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G133901 [exp]	10.95	0.8268
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048800 [exp]	31.46	0.7929
AT1G77060			Phosphoenolpyruvate carboxylas...		Potri.002G073600 [exp]	46.28	0.7637
AT4G34090			unknown protein		Potri.001G304401 [exp]	112.24	0.7802
AT5G45480			Protein of unknown function (D...		Potri.006G013400 [exp]	129.75	0.7718
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.005G182200 [exp]	148.37	0.7477	Pt-MADS2.2
AT1G70260			nodulin MtN21 /EamA-like trans...		Potri.010G096100 [exp]	212.44	0.7525	N21L6

Compare expression of checked genes

Potri.003G004401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.