Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28780 163 / 5e-48 PIF1 helicase (.1) AT3G51700 155 / 6e-45 PIF1 helicase (.1) AT3G51690 148 / 2e-42 PIF1 helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157501 [exp] 447 / 1e-155 AT5G28780 196 / 2e-57 PIF1 helicase (.1) Potri.009G002650 [exp] 392 / 3e-127 AT5G28780 154 / 1e-40 PIF1 helicase (.1) Potri.001G165240 [exp] 368 / 1e-118 AT5G28780 171 / 1e-46 PIF1 helicase (.1) Potri.009G007400 [exp] 335 / 1e-115 AT5G28780 208 / 2e-65 PIF1 helicase (.1) Potri.008G167001 [exp] 330 / 3e-114 AT5G28780 220 / 2e-70 PIF1 helicase (.1) Potri.001G185950 [exp] 352 / 6e-112 AT5G28780 213 / 3e-61 PIF1 helicase (.1) Potri.007G048501 [exp] 323 / 6e-109 AT5G28780 123 / 3e-31 PIF1 helicase (.1) Potri.012G073100 [exp] 298 / 8e-101 AT5G28780 174 / 8e-52 PIF1 helicase (.1) Potri.008G203701 [exp] 243 / 5e-77 AT5G28780 70 / 5e-13 PIF1 helicase (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02689 [poplar] [flax] Herpes_Helicase Helicase CL0023 [poplar] [flax] P-loop_NTPase PF05970 [poplar] [flax] PIF1 PIF1-like helicase
Representative CDS sequence Show only first row Show all	>Potri.003G004501.1 pacid=42786097 polypeptide=Potri.003G004501.1.p locus=Potri.003G004501 ID=Potri.003G004501.1.v4.1 annot-version=v4.1 AATATGAGGCTATCATCCAATGGACTTTCAAATGATCAAAAGAAAGAACTTGCTATTTTTGCCAACTGGATTCTTGCAATTGGTGATGGAACTCAACATG ATGCTTTATTCCCTGATGATTCTGATGCATCCATGATTAAAATACCACAAGATCTTTTGCTTGAACCTGGATCTAACCCCATATTAGCAATTGTTTCAGC AGTGTATCCCTCTATTCGTGATATCAATATTGATCCATGCTATTTTAGAGATAGAGCAATTGTAACTCCAAGAAATGCTACAGTTTCTGAAATCAACGAT TTTATCTTAAACATGTTGCCAGGAATGAAGCGGATTTACCTAAGTACTGATACTGTTTGCAAAACATCGAGCGATGGTGATAATGCAGAGATTTTGTATC CCGTTGAATTTATCAATCAACTTGAGTTCAATGGACTGGTTTATGTAACGGAACAAGTACTTATTGTTACACAACTTGCTGAGAGGGTCATAGAAGCTCA AATAATAACAGGGTCTTTTATTGGCAATCGTGTATTTATTCCAAGGATTGTTTTTCCAATAAATGATGCAAAATGTCCATTCACAATTAAACGAAGACAA TTTCCTATAAGACCGTGTTATGCTATGACAATAAATAAAAGTCAAGGACAATCATTGAAAGTTGTCGGGGTTTTTCTCAAGGATCAAGTTTTCACTCATG GACAATTGTATGTTGCTCTTTCACGGGTTACATCAAGACAAGGACTAAAGATTATCACATGCGATACTGAAGGAAATCATTCAATCTATGTGAAAAACAT TGTGTATAAAGATGTTCTTAGCTCTCTATCAGTGTATAATTTATCATGA
AA sequence Show only first row Show all	>Potri.003G004501.1 pacid=42786097 polypeptide=Potri.003G004501.1.p locus=Potri.003G004501 ID=Potri.003G004501.1.v4.1 annot-version=v4.1 NMRLSSNGLSNDQKKELAIFANWILAIGDGTQHDALFPDDSDASMIKIPQDLLLEPGSNPILAIVSAVYPSIRDINIDPCYFRDRAIVTPRNATVSEIND FILNMLPGMKRIYLSTDTVCKTSSDGDNAEILYPVEFINQLEFNGLVYVTEQVLIVTQLAERVIEAQIITGSFIGNRVFIPRIVFPINDAKCPFTIKRRQ FPIRPCYAMTINKSQGQSLKVVGVFLKDQVFTHGQLYVALSRVTSRQGLKIITCDTEGNHSIYVKNIVYKDVLSSLSVYNLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28780			PIF1 helicase (.1)		Potri.003G004501 [exp]	0	1
					Potri.012G100750 [exp]	1.73	1.0000
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.013G104900 [exp]	2.44	0.9702	AGL11.2
AT1G43760			DNAse I-like superfamily prote...		Potri.003G047001 [exp]	3.00	0.8542
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114900 [exp]	3.16	0.9854
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Potri.002G092300 [exp]	4.79	0.6827
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	5.09	0.7805	PtrLHT1
					Potri.007G065950 [exp]	5.47	0.8470
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	5.65	0.9121
AT3G30180		CYP85A2, BR6OX2	brassinosteroid-6-oxidase 2 (....		Potri.010G156800 [exp]	9.48	0.7306
					Potri.008G012050 [exp]	9.79	0.5696

Compare expression of checked genes

Potri.003G004501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.