Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07010 291 / 6e-97 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G07000 287 / 2e-95 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT1G13420 259 / 8e-85 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT1G74100 258 / 1e-84 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT3G45070 253 / 1e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 247 / 4e-80 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G28170 244 / 3e-79 SOT7 sulphotransferase 7 (.1) AT2G03760 241 / 7e-78 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT2G03770 241 / 8e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G14920 236 / 5e-76 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G005100 [exp] 628 / 0 AT5G07010 301 / 5e-101 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G188800 [exp] 333 / 8e-114 AT5G07010 325 / 2e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 331 / 3e-113 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036700 [exp] 316 / 3e-107 AT5G07010 270 / 1e-88 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 314 / 2e-106 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189066 [exp] 312 / 7e-106 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 311 / 2e-105 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193500 [exp] 310 / 1e-104 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 307 / 8e-104 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 293 / 7e-98 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 290 / 6e-97 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 244 / 1e-78 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10041611 [exp] 208 / 1e-64 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 188 / 7e-57 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 187 / 8e-57 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 182 / 5e-55 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 182 / 8e-55 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 182 / 2e-52 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10003070 [exp] 174 / 1e-51 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.003G005200.1 pacid=42786232 polypeptide=Potri.003G005200.1.p locus=Potri.003G005200 ID=Potri.003G005200.1.v4.1 annot-version=v4.1 ATGGAGGGTGTGGAAATCACTGTAGAGGAAGAGCAGAGAGATGAATCCCAGGAGTTGCTTCAACACCTCCCAACAGAAATAGGTATGGGAGGTAATCTTC TCTATCTATACCAAGGATTCTGGTGTCCACAGGTATCAATCAAGGGCATGATGTTGTTTCAACAACACTTCAAGGCACAAGAAACTGACCTCATACTTGC CAGCATTCCAAAATCAGGTACCACTTGGTTAAAGGCCTTGACTTATACTATAGTTAATCGCTCTCATCACTCACTTGAAAAGAGCCCTTTGCTCACCAAT GGCCCTCATGGGGTGGTCCCCTTTCTTGAGTTTGATATCAGCTCCAGAAACCAGTTTCTGGAACAAGACAAGCTTCCCGAGCCTAGGATTTTCGGAACCC ACTCACCTTACACGGCACTCCCGTGTTCGGTCAAAGATTCTGCTGCTAAGATTGTGTATGTGTGTCGGAATCCTCTGGACATGTTCATTTCCTATTGGAA ATTCAGTGTCAATATCCCAAAGGAGAATGAGAAACACCTTTCACTAGGAGATGCTTTTGACAAGTTCTGTCAGGGACTTCATGGCTACGGTCCATTTTGG GATCATTTATTAGGGTATTGGAAGGCAAGCTTGGAGAGACCTGATAAGGTCTTGTTTCTGAAATACGAGGACATTAAAAAGAACAATGTCCCCTGCATCA AGAAGCTAGCTAACTTTCTGGGGCTTCCTTTCTCTGTGGAGGAAGAGGAGCAAGGTTTGATAGAGGAAATATCGAGGCTATGCAGCTTTGAAAGCATGAA AAACTATGAAGCAACCATGACAGGCACAGGCCCTCTTGGGATCCCAGCTAGTGCCTTCCTCAGGAAAGGACAGGTGGGAGATTCACTGAATTATCTAACA CCCTCAATGGTGAGCCGTGTGGAGAATCTGATTCAAGAGAAGCTCCAAGATTCTGGTCTCAGCTTCTGTCGGTCTAGCGCCTTCTAA
AA sequence Show only first row Show all	>Potri.003G005200.1 pacid=42786232 polypeptide=Potri.003G005200.1.p locus=Potri.003G005200 ID=Potri.003G005200.1.v4.1 annot-version=v4.1 MEGVEITVEEEQRDESQELLQHLPTEIGMGGNLLYLYQGFWCPQVSIKGMMLFQQHFKAQETDLILASIPKSGTTWLKALTYTIVNRSHHSLEKSPLLTN GPHGVVPFLEFDISSRNQFLEQDKLPEPRIFGTHSPYTALPCSVKDSAAKIVYVCRNPLDMFISYWKFSVNIPKENEKHLSLGDAFDKFCQGLHGYGPFW DHLLGYWKASLERPDKVLFLKYEDIKKNNVPCIKKLANFLGLPFSVEEEEQGLIEEISRLCSFESMKNYEATMTGTGPLGIPASAFLRKGQVGDSLNYLT PSMVSRVENLIQEKLQDSGLSFCRSSAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G005200 [exp]	0	1
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G005100 [exp]	2.00	0.9475
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G025100 [exp]	6.92	0.8596
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	12.96	0.8601
AT3G04300			RmlC-like cupins superfamily p...		Potri.002G254800 [exp]	16.24	0.8311
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	18.43	0.8579	PtrAOH3,ATH2.3
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013800 [exp]	30.00	0.8148
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	31.63	0.8293
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	32.98	0.8370
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Potri.007G097500 [exp]	36.37	0.7984
AT4G12735			unknown protein		Potri.001G226400 [exp]	36.85	0.8384

Compare expression of checked genes

Potri.003G005200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.