Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09660 335 / 7e-116 RNA-binding KH domain-containing protein (.1.2) AT4G26480 258 / 4e-85 RNA-binding KH domain-containing protein (.1) AT2G38610 248 / 7e-82 RNA-binding KH domain-containing protein (.1.2) AT5G56140 242 / 7e-79 RNA-binding KH domain-containing protein (.1) AT3G08620 239 / 4e-78 RNA-binding KH domain-containing protein (.1) AT5G51300 101 / 1e-23 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225900 [exp] 495 / 6e-179 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.006G111400 [exp] 259 / 5e-86 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.016G140800 [exp] 256 / 6e-85 AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 251 / 1e-82 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.001G471000 [exp] 249 / 5e-82 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.019G132100 [exp] 243 / 9e-80 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 236 / 3e-77 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.003G107200 [exp] 106 / 2e-25 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G126400 [exp] 106 / 2e-25 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035768 [exp] 457 / 1e-163 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 456 / 1e-163 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035608 [exp] 259 / 4e-86 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 259 / 7e-86 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 224 / 8e-72 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 222 / 3e-71 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 221 / 5e-71 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 189 / 8e-59 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 105 / 3e-25 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16544 [poplar] [flax] STAR_dimer Homodimerisation region of STAR domain protein
Representative CDS sequence Show only first row Show all	>Potri.003G005500.1 pacid=42785783 polypeptide=Potri.003G005500.1.p locus=Potri.003G005500 ID=Potri.003G005500.1.v4.1 annot-version=v4.1 ATGGGAGAGAGAATTCCATCCGGGAGTTACTTTCAGTACCCTCCCTCTGGAGTCCACCATGCTACTCCTCAGAGGTCCAGTTCTCTTCCTTCAGATCTTG AAAGATATTTGGCCGAGTTGTTAGCAGAGAAGCATAAGTTGGGGCCATTTGTGCAAGTTTTACCAATTTGTTGCAGACTTCTTTACCAAGAAATCAGACG GGCATCAGCTTACAATCAAGGTTTTGTAGATCATGAAAGATATGAACATGAGAGTCCATTTAGGTCATTAGGTCAGCATCCAAATGGAAGGCCGATGGAT TTGGAGGGATGGTCTGCTATGCCAAAAGAGGAGAATGGGCATCTTCAAAGAATGGCCTCATTACCAGCTGCTTCAATGGGTTGGCCTGGGGTCCCTGGAA TTTCAAGTACGCCAGTTGTGAAGAGAGTAATTAGACTCGATGTTCCTGTTGACAAATATCCAAATTATAATTTTGTTGGCCGAATCTTGGGACCACGAGG GAACTCCTTAAAAAGAGTTGAAGCCTTGACAGAATGTAGGGTGTATATAAGAGGCAAGGGCTCTGTAAAGGATTCTCTAAAGGAAGAAAAACTTAAAGAT AAACCTGGATATGAGCACCTTAATGAACCACTGCATGTGTTGGTGGAGGCTGAATTTCCAGAGGATATAATGAATGCCCGCTTGGACCATGCAATAACAA TATTAGAAAGCCTCCTGAAGCCTGTGGATGAATCCTTTGATAACTATAAGAAACAACAATTAAGGGAACTAGCTTTGCTAAATGGGACACTAAGGGAGGA AAGCCCGAGCATGAGCCCTAGCATGAGCCCAAGCATGTCACCCTTCAACACTGCAGGAATGAAACGAGCCAAGACAGGAAGATAA
AA sequence Show only first row Show all	>Potri.003G005500.1 pacid=42785783 polypeptide=Potri.003G005500.1.p locus=Potri.003G005500 ID=Potri.003G005500.1.v4.1 annot-version=v4.1 MGERIPSGSYFQYPPSGVHHATPQRSSSLPSDLERYLAELLAEKHKLGPFVQVLPICCRLLYQEIRRASAYNQGFVDHERYEHESPFRSLGQHPNGRPMD LEGWSAMPKEENGHLQRMASLPAASMGWPGVPGISSTPVVKRVIRLDVPVDKYPNYNFVGRILGPRGNSLKRVEALTECRVYIRGKGSVKDSLKEEKLKD KPGYEHLNEPLHVLVEAEFPEDIMNARLDHAITILESLLKPVDESFDNYKKQQLRELALLNGTLREESPSMSPSMSPSMSPFNTAGMKRAKTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09660			RNA-binding KH domain-containi...		Potri.003G005500 [exp]	0	1
AT5G22040			unknown protein		Potri.008G001700 [exp]	8.66	0.7850
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Potri.001G377200 [exp]	13.92	0.7742	RPB19.1
AT5G07900			Mitochondrial transcription te...		Potri.012G046700 [exp]	20.42	0.7705
AT5G45590			Ribosomal protein L35 (.1)		Potri.001G133600 [exp]	22.73	0.7448
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032900 [exp]	22.80	0.7666	Pt-GBP.7
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074500 [exp]	24.37	0.7256
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	25.09	0.7505
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	26.15	0.7661
AT4G08940			Ubiquitin carboxyl-terminal hy...		Potri.002G097900 [exp]	26.60	0.7694
AT5G19830			Peptidyl-tRNA hydrolase family...		Potri.001G005000 [exp]	27.12	0.7497

Compare expression of checked genes

Potri.003G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.