Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 256 / 2e-79 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225800 [exp] 696 / 0 AT1G33980 241 / 1e-73 Smg-4/UPF3 family protein (.1.2) Potri.019G077500 [exp] 235 / 6e-71 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035769 [exp] 419 / 4e-142 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2) Lus10037346 [exp] 379 / 9e-127 AT1G33980 259 / 5e-81 Smg-4/UPF3 family protein (.1.2) Lus10003510 [exp] 182 / 4e-53 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2) Lus10037347 [exp] 162 / 7e-47 AT1G33980 70 / 9e-14 Smg-4/UPF3 family protein (.1.2) Lus10009488 [exp] 152 / 6e-41 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2) Lus10025489 [exp] 0 / 1 ND 53 / 2e-13
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03467 [poplar] [flax] Smg4_UPF3 Smg-4/UPF3 family
Representative CDS sequence Show only first row Show all	>Potri.003G005700.2 pacid=42786218 polypeptide=Potri.003G005700.2.p locus=Potri.003G005700 ID=Potri.003G005700.2.v4.1 annot-version=v4.1 ATGAAGGTTGGTCAGTCTGACAAGACCAAAGTGGTGGTCCGCCACTTGCCACCGGGGGTTTCTCAGCCGATGTTCGTCGAGCAAATCGACCTTGCTTTCT CTGGCCGCTACAACTGGCTCTCCTATCGTCCTGGCAAGAGCAGCCAGAAGCATCAATCCTGTTCTAGAGCCTATATTGACTTTAAAAGGCCTGACGATGT TATTGACTTTGCCGAGTTCTTTAACGGCCACCTATTTGTTAATGAGAAAGGCACTCAGTTTAAAGCTATTGTTGAGTATGCTCCTTCACAGCATGTGCCA AAGCAGTGGTCTAAGAAAGATGGTCGTGAAGGCACCATATTGAAAGATCCTGAGTATTTGGAGTTCCTTGAATTTATTGCAAAGCCTGTCGAGAATCTTC CAAGTGCTGAAATACAATTGGAGAGAAGAGAAGCTGAAAGAGCTGGTGTTGCAAAAGATGCTCCCATTGTTACCCCTTTAATGGAATTTATTCGACAGAA AAGAGCTGCTAAGAGTGGACCTCGGAGGATTTTGTCCAATGGGAAACCGAGCAGAAGGGCTGGTGGCAGTGGAAGTCCGAGCTCTTCCTCATCAAAACGA GGTTCTGAGAAGAAGAGAGCTTCAACAACAATGTATGTTTTAAGGGACACTGTGAAAGGCACAAGTGGAAAAGAGAAATCAATTTATGCACAGGTTCCCA AGCTAGATGACCGGCAACTATCTAAAGCTGTAACTTTAGGTTCTGGATCTGGGACTGAAGTATCAGAAGAGGAAACTGCAGTTTCTGGAATTACTGGTAC CGGGAAGAAGAAAATCCTGCTTCTGAAAGGGAAAGAGAAGGAAATTTCACTGCAACAGAGCATATCACCATCTGATAGAAATATCATTAGTTCGACCGCT TTAAAGAGCCAGCGGCATGAATCCTCTGGAAGGGTAATCAAAAGCATACTCTTAAACAAGGATTCGCGTCGAATTCAATCCTCTGGAGTCCAGTCTGAGC CACAGATGCAAACCTCAAATCTAGAAAAGGACAAACGTCCTCCTCGGCCCCCACATGCATTGGTTTTGAAGGATGCAAATGGAACACCAGATGACAAGGT TGTTGGGAATGATTTGCATGGTTTTCCAAATGAGAAGCAGGAAAGGCGAACCCGAAATAAAGATAGACCTGATCGTGTAGTGTGGACTCTCCGCAGATCA GAGGGATCCTATGCAAGTGATGAATCCTTGTCATCATCTGCATATCTATCTACACAGTCAGGGTTTGATTCTTCACAAGTAAACCATGGAGATGTTAAAG CGGACACCTTAAATTTAAGGAGCGGAGAAGTAAAAGCACTTGGAAGTGGGCGTAGTAATCATTCTTCTTTAGATAATGGATCACATAAACATTCTGGTCG TCGGGGACCACCACATCCTGTGAGGGATGCTGATGGCTCCACTGTTGAGGGGAAGAGTCTTAAAAGAGGTGGTGCTTCTGGTTATGGGTCCCATGAGAAG CAAGTCTGGGTTCAGAAGTCCAGTTCTGGTTCTTAG
AA sequence Show only first row Show all	>Potri.003G005700.2 pacid=42786218 polypeptide=Potri.003G005700.2.p locus=Potri.003G005700 ID=Potri.003G005700.2.v4.1 annot-version=v4.1 MKVGQSDKTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSYRPGKSSQKHQSCSRAYIDFKRPDDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVP KQWSKKDGREGTILKDPEYLEFLEFIAKPVENLPSAEIQLERREAERAGVAKDAPIVTPLMEFIRQKRAAKSGPRRILSNGKPSRRAGGSGSPSSSSSKR GSEKKRASTTMYVLRDTVKGTSGKEKSIYAQVPKLDDRQLSKAVTLGSGSGTEVSEEETAVSGITGTGKKKILLLKGKEKEISLQQSISPSDRNIISSTA LKSQRHESSGRVIKSILLNKDSRRIQSSGVQSEPQMQTSNLEKDKRPPRPPHALVLKDANGTPDDKVVGNDLHGFPNEKQERRTRNKDRPDRVVWTLRRS EGSYASDESLSSSAYLSTQSGFDSSQVNHGDVKADTLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADGSTVEGKSLKRGGASGYGSHEK QVWVQKSSSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	0	1
AT5G38690			Zinc-finger domain of monoamin...		Potri.006G257400 [exp]	1.73	0.8005
AT5G28850			Calcium-binding EF-hand family...		Potri.019G019500 [exp]	9.16	0.7098
AT2G32760			unknown protein		Potri.017G056800 [exp]	14.56	0.7488
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	20.83	0.7662	APG9.1
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	21.81	0.7439
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.005G173200 [exp]	31.62	0.6880
AT4G26680			Tetratricopeptide repeat (TPR)...		Potri.014G166001 [exp]	31.74	0.6995
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	32.86	0.7448
AT1G54610			Protein kinase superfamily pro...		Potri.005G045500 [exp]	35.15	0.6347
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	45.03	0.7154

Compare expression of checked genes

Potri.003G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.