Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57770 869 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 184 / 6e-51 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT5G49555 52 / 9e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066000 [exp] 182 / 7e-50 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 181 / 2e-49 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.007G025300 [exp] 46 / 5e-05 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037348 [exp] 889 / 0 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10035770 [exp] 798 / 0 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10029347 [exp] 188 / 3e-52 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 186 / 2e-51 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10014308 [exp] 47 / 3e-05 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 46 / 8e-05 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.003G005800.1 pacid=42785293 polypeptide=Potri.003G005800.1.p locus=Potri.003G005800 ID=Potri.003G005800.1.v4.1 annot-version=v4.1 ATGACATTCTCTGTCTTCCCCAACCGATCCCACTTTCTCTCCTTCAACTCTGAATCCCCTCCTACTCTCAAGAAACCAGTTTTCGCGCGAACAAGCTCCA ACGCTCAAACCCCCTCTTCCGCCGGCTCTCTCCTTGTCAATGATTACAAACCCTTCCCAGGGAAGCCAGAGGCCGATGTTGTTGTTATTGGGAGTGGTAT TGGTGGGCTTTGTTGTGCAGGACTTCTAGCTAGATACCAGCAGGATGTTCTTGTATTGGAAAGTCATGATCGCCCTGGGGGTGCTGCTCATTCTTTTGAG ATAAAAGGCTATAAGTTTGATTCTGGTCCATCATTGTTTTCTGGTTTTCAATCAAGAGGTCCTCAGGCAAATCCCCTTGCACAGGTTCTGGATGCTCTGG GTGAATCAATTCCATGTGTGAATTATGACTCTTGGATGGTTTACGTACCTGAAGGTGAATTCCTGTCACGCATTGGCCCCACAGAATTTTACAAGGACCT TGAGAAGTATGCAGGTCCCAATGCCGTGCAAGAGTGGAAAAAGCTTCTTGATGCGATACTTCCACTTTCTTCTGCTGCAATGGCTCTTCCTCCTTTATCT ATTCGAGGTGATTTTGGTGTTCTTTCCACTGCTGCAGCTAGATATGCACCCTCTCTATTGAAATCCTTTCTGCAGATGGGACCTCAGGGAGCTTTAGGTG CTACAAAGCTTCTTAGGCCTTTCTCAGAAATCATTGACTCATTGGAGCTGAAAGACCCTTTTATACGAAACTGGGTGGACCTTCTGGCATTCCTTCTTGC AGGGGTGAAATCTAATGGTATACTCTCAGCAGAGATGATTTACATGTTTGCAGAATGGTATAAGCCAGGTTGCAGTCTTGAGTACCCTCTTCATGGAACT GGGGCCTTAGTTGATGCCCTTGTCAGAGGACTGCAAAAGTTTGGTGGACGGCTTTCTCTAAGAAGTCATGTAGAAGAGATTGTTGTCGAAAACAATAGAG CCATTGGAGTCAAGCTAAGAAGCGGTCAATTTATACGTGCTAAAAAGGCTGTAATCAGCAATGCATCCATGTGGGACACTTCAAATCTGTTGCCCAAGGA AGTTCTTCCGAAGTCATATCTGGACAGGATCAACACAACACCTCAGTGTGAATCATTCATGCATCTCCATTTGGGTTTTGATGCAGAGTGTATAAAAAAA GACTTGGGGATTCATCACATCGTTGTTAATGATTGGAGTGGAGGAGTCGATGCAGATCAAAATGTTGTCTTGATATCTGTTCCTAGTGTGCTTAGTCCAG ATTTAGCACCCCCTGGAAAACATCTATTACACGCTTACACACCAGGAACTGAGCCTTTTGAATTGTGGGAAGGACTCGATCGTAGAAGTGCCGAGTACAA ACAACTCAAAGCTGAGCGGTCAGAGGTTATGTGGAGGGCGGTGGAGCGTGCCCTTGGTCCAGGCTTCAGCCGCGAGAAATGCGAGGTGAAGTTAGTTGGA ACTCCATTGACACATAAGAGATTTCTTCGAAGGAACAGAGGAACTTATGGACCAGCTATTGAAGCTGGGAAAAATACCTTTCCTGGCCATTCAACTCCCA TATCCCAGCTTTATTGTTGTGGAGATTCTACTTTTCCTGGCATTGGAGTCCCGGCAGTTGCTGCTAGTGGCGCCATTGTTGCTAACTCACTAGTTTCGGT GTCTCAACATTCCCAGCTTCTCGACGCGATTGGGATTTAA
AA sequence Show only first row Show all	>Potri.003G005800.1 pacid=42785293 polypeptide=Potri.003G005800.1.p locus=Potri.003G005800 ID=Potri.003G005800.1.v4.1 annot-version=v4.1 MTFSVFPNRSHFLSFNSESPPTLKKPVFARTSSNAQTPSSAGSLLVNDYKPFPGKPEADVVVIGSGIGGLCCAGLLARYQQDVLVLESHDRPGGAAHSFE IKGYKFDSGPSLFSGFQSRGPQANPLAQVLDALGESIPCVNYDSWMVYVPEGEFLSRIGPTEFYKDLEKYAGPNAVQEWKKLLDAILPLSSAAMALPPLS IRGDFGVLSTAAARYAPSLLKSFLQMGPQGALGATKLLRPFSEIIDSLELKDPFIRNWVDLLAFLLAGVKSNGILSAEMIYMFAEWYKPGCSLEYPLHGT GALVDALVRGLQKFGGRLSLRSHVEEIVVENNRAIGVKLRSGQFIRAKKAVISNASMWDTSNLLPKEVLPKSYLDRINTTPQCESFMHLHLGFDAECIKK DLGIHHIVVNDWSGGVDADQNVVLISVPSVLSPDLAPPGKHLLHAYTPGTEPFELWEGLDRRSAEYKQLKAERSEVMWRAVERALGPGFSREKCEVKLVG TPLTHKRFLRRNRGTYGPAIEAGKNTFPGHSTPISQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Potri.003G005800 [exp]	0	1
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	3.00	0.9773
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.005G112900 [exp]	3.74	0.9730
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	6.32	0.9633
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	10.53	0.9687
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.015G074100 [exp]	11.74	0.9507	Pt-ALDH1.3
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	13.67	0.9536
AT4G28740			unknown protein		Potri.014G194500 [exp]	13.78	0.9567
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	15.23	0.9587
AT1G01970			Tetratricopeptide repeat (TPR)...		Potri.014G070500 [exp]	15.58	0.9483
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	15.68	0.9615

Compare expression of checked genes

Potri.003G005800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.