Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09840 732 / 0 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT1G57870 721 / 0 ATSK42 shaggy-like kinase 42 (.1.2.3) AT5G14640 622 / 0 ATSK13 shaggy-like kinase 13 (.1) AT5G26751 615 / 0 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT3G05840 610 / 0 ATSK12 Protein kinase superfamily protein (.1.2) AT4G00720 589 / 0 ASKTHETA, ATSK32 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) AT1G06390 574 / 0 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2) AT2G30980 573 / 0 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT4G18710 561 / 0 DWF12, UCU1, BIN2, ATSK21 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) AT3G61160 545 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G225700 [exp] 798 / 0 AT1G09840 728 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Potri.014G115600 [exp] 623 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.002G190500 [exp] 620 / 0 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.005G005400 [exp] 612 / 0 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G004700 [exp] 610 / 0 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G075100 [exp] 600 / 0 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.002G155000 [exp] 592 / 0 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.011G068600 [exp] 560 / 0 AT4G18710 723 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2) Potri.004G059000 [exp] 559 / 0 AT4G18710 728 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037349 [exp] 682 / 0 AT1G09840 721 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Lus10001519 [exp] 609 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10031440 [exp] 609 / 0 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10035771 [exp] 608 / 0 AT1G09840 642 / 0.0 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) Lus10013088 [exp] 605 / 0 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 600 / 0 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 594 / 0 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10036568 [exp] 590 / 0 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 588 / 0 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10025395 [exp] 555 / 0 AT4G18710 706 / 0.0 ULTRACURVATA 1, DWARF 12, BRASSINOSTEROID-INSENSITIVE 2, SHAGGY-LIKE KINASE 21, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G005900.4 pacid=42786225 polypeptide=Potri.003G005900.4.p locus=Potri.003G005900 ID=Potri.003G005900.4.v4.1 annot-version=v4.1 ATGTCGTCTGCCAGCTTAGGAAATGGGGGGGTTGGAAGTTCCAGGTCCGTTAATGGTTTCAAAAGTTCGTCTAGTTCCATGGATTGGCTGGGCAGAGAGA TGCTTGAGATGAGATTGAGAGACAAGGTGGACCATGATGAGGACAGAGATAGTGAACCCGATATAATTGATGGTGTTGGTGCAGAAGCGGGACATGTCAT CAGGACTACTATTGGTGGCCGAAATGGTCAATCTAGGCAGACCGTCAGTTATATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTCGTTCAA GCGAAATGTAGGGAAACTGGAGAGATCGTCGCCATCAAGAAAGTTCTTCAAGACAAGCGCTACAAGAACAGGGAGTTACAGATTATGCAGATGTTGGATC ATCCAAATATTGTAGCTCTTAAACACTGCTTCTTTTCTACAACAGACAAGGAAGAGCTCTACCTAAATCTTGTTCTTGAATATGTTCCTGAAACTGTTAA TCGTATTGCTAGGAACTACAGCAGGAACAACCCACGAATGCCTCTAATATATGTTAAACTCTACACCTATCAGATATGTAGGGCGCTTGCCTATATACAC AACTGCATTGGTATCTGTCACCGTGACATCAAGCCTCAAAACTTACTGGTGAATCCATCCACACATCAGCTGAAACTTTGTGATTTTGGGAGTGCTAAAG TGCTGGTGAAAGGTGAGCCAAATGTATCTTACATCTGTTCAAGATACTATCGTGCTCCAGAGCTGATTTTTGGTGCTACTGAGTACACAACTGCTATTGA TATATGGTCTACTGGTTGCGTGATGGCTGAGTTGCTACTTGGGCAGCCTTTGTTTCCGGGAGAAAGTGGAGTTGACCAGCTAGTTGAGATCATTAAGGTT TTGGGAACACCAACCAGGGAAGAGATAAAGTGCATGAACCCAAACTATACAGAATTTAAGTTCCCACAGATTAAGCCTCATCCATGGCACAAAGTCTTCC AAAAGCGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGATTTTTCCAGTACTCTCCTAATCTGCGATGCACTGCTCTGGAAGCTTGCATTCACCCGTT CTTTGATGAATTGAGAGATCCAGCCACCCGCCTTCCAAATGGCCGCCCTCTTCCTCCACTGTTTAATTTTAAACCTCAAGAGCTCTCAGGCATACCAACT GATATTGTCAATAGGCTCATTCCGGATTATGCTCGTAAACAGAACTTATTCATGGCTTTGCACACCTAG
AA sequence Show only first row Show all	>Potri.003G005900.4 pacid=42786225 polypeptide=Potri.003G005900.4.p locus=Potri.003G005900 ID=Potri.003G005900.4.v4.1 annot-version=v4.1 MSSASLGNGGVGSSRSVNGFKSSSSSMDWLGREMLEMRLRDKVDHDEDRDSEPDIIDGVGAEAGHVIRTTIGGRNGQSRQTVSYIAEHVVGTGSFGVVVQ AKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRNNPRMPLIYVKLYTYQICRALAYIH NCIGICHRDIKPQNLLVNPSTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKV LGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPATRLPNGRPLPPLFNFKPQELSGIPT DIVNRLIPDYARKQNLFMALHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.003G005900 [exp]	0	1
AT4G22840			Sodium Bile acid symporter fam...		Potri.003G117300 [exp]	5.65	0.8838
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	13.03	0.8859
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	13.41	0.8472
AT1G21480			Exostosin family protein (.1.2...		Potri.002G072300 [exp]	20.00	0.8700
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.006G165300 [exp]	22.29	0.8716
AT3G48860			unknown protein		Potri.001G065800 [exp]	28.03	0.8754
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	29.41	0.8777
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G134200 [exp]	36.12	0.8415
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	36.41	0.8485
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.014G068300 [exp]	40.89	0.8643

Compare expression of checked genes

Potri.003G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.