Plant FIBer expression Database

Potri.003G006100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G224600
[exp]
147 / 1e-45 AT4G24275 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G006100.1 pacid=42785056 polypeptide=Potri.003G006100.1.p locus=Potri.003G006100 ID=Potri.003G006100.1.v4.1 annot-version=v4.1
ATGAATGGTTATTCCAAGATCAAAATCTTTGGCACTGCCAGATCAAGATCCATGGACTTTTCAGATCTTTCATTAGCATTTCCTGAGCCCACAAAATCCC
ACACAGAGCCCCAAGAAACCAACAAGATAGTAGGCGACCACGACAATACCAAGAAGAACATGATTAGCACAGACACCACCACCCAAGACTCACTCTCGGT
GCTTGAAGAAGATGAAGAAAACAATGTTGTAGAGGGGTTCGGCGCGAAGCTGAGGAGGAGCTCGTCCGTTTCTTCATCAGCTTCTGCACTTCAGTCTGCA
GTGAAGAAAGCATTCTCCGTGACAAGATCCTCTTCGGTGTCAGAAAGGTATTGCAGGATCCATGACCAGTCTGCAACACTATCATCACCCATCCATGATG
AAGATGGTACTTTGGACACGATGGAGTCAACAAGATCTGTGACGAAAAAACATAGCAGATCAGGCAGGTTCCTGAAGGTCTGTAAGAAACTTTTTGGACT
TTAG
AA sequence
>Potri.003G006100.1 pacid=42785056 polypeptide=Potri.003G006100.1.p locus=Potri.003G006100 ID=Potri.003G006100.1.v4.1 annot-version=v4.1
MNGYSKIKIFGTARSRSMDFSDLSLAFPEPTKSHTEPQETNKIVGDHDNTKKNMISTDTTTQDSLSVLEEDEENNVVEGFGAKLRRSSSVSSSASALQSA
VKKAFSVTRSSSVSERYCRIHDQSATLSSPIHDEDGTLDTMESTRSVTKKHSRSGRFLKVCKKLFGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24275 unknown protein Potri.003G006100
[exp]
0 1
AT5G54190 PORA protochlorophyllide oxidoreduc... Potri.011G122400
[exp]
2.82 0.8650 Pt-PORA.1
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Potri.008G133800
[exp]
5.29 0.8466 Pt-CABP1.1
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.002G102900
[exp]
9.59 0.8530
AT1G79040 PSBR photosystem II subunit R (.1) Potri.001G438800
[exp]
12.00 0.8327 Pt-PP1.2
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.018G089400
[exp]
12.04 0.8696
AT5G13400 Major facilitator superfamily ... Potri.001G068600
[exp]
13.41 0.8502
AT2G41180 SIB2 sigma factor binding protein 2... Potri.006G038900
[exp]
16.97 0.8418
AT4G38620 MYB AtMYB4 myb domain protein 4 (.1) Potri.005G112000
[exp]
21.81 0.8401
AT5G57150 bHLH bHLH035 basic helix-loop-helix (bHLH) ... Potri.006G074800
[exp]
27.71 0.7891
AT5G14750 MYB WER1, WER, AtMY... WEREWOLF 1, WEREWOLF, myb doma... Potri.012G080400
[exp]
34.07 0.8234

Potri.003G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.