Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 120 / 2e-30 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 115 / 1e-28 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G26510 108 / 1e-28 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G79570 108 / 4e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G48240 100 / 2e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G35050 105 / 3e-25 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT4G05150 102 / 1e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G04700 102 / 3e-24 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 102 / 3e-24 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224500 [exp] 353 / 3e-122 AT5G49920 185 / 3e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.018G114300 [exp] 117 / 4e-29 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 117 / 4e-29 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 117 / 5e-29 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.018G095800 [exp] 115 / 2e-28 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 115 / 2e-28 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 112 / 2e-27 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 109 / 2e-26 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 109 / 2e-26 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035772 [exp] 225 / 2e-71 AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10037350 [exp] 224 / 8e-71 AT5G49920 197 / 8e-61 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 125 / 1e-31 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 124 / 1e-31 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10035641 [exp] 111 / 3e-29 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10006977 [exp] 112 / 3e-27 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 110 / 7e-27 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 107 / 2e-26 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10031750 [exp] 107 / 2e-26 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 108 / 4e-26 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.003G006200.7 pacid=42786694 polypeptide=Potri.003G006200.7.p locus=Potri.003G006200 ID=Potri.003G006200.7.v4.1 annot-version=v4.1 ATGGCGGAGGAAGCTGGTTCTACTGCGTCGTCGCCGAGGAACAGAGTGAAGTTCTTGTGTAGCTATGGCGGAAACATCTTGCCGAGAGCCGTTGATGGCC ACCTCAAGTACATCGGCGGTGAGACACGTGTCATTGCCATTCCTCGCGACATCACCTTCTCAGAGTTTACAAAGAAGCTTAGTGCAGAGTTCGAAGGAGA CATGGTCCTGAAGTACCAGGTTATACCTGAAGAACTTGACGTTTTGGTGTCTGTAAAAAGTGACGAGGATCTGAAGCATATGCTTGATGAATATGACCGT CATGAAAGCGCAGGAACTCCAAAGTTCCGGGCCTTCTTGTTCCCTTCAAATCCTGCTGCAATAGAAAAAACTACTCCCATGGATCCCTGTGCACCAGAAC AACGTTATCTGGATTCTATCAATGGTATGGTTCGTACAACTGCCAATTTTAAACTTCCCCCTATCAACGCAAACTGGTCCTCCTCCAGCGTCTCTGCTAG CTCCTCTCCGAAATGTACTTCTCCAGAAGGCAACACTTTTGATTCCGCGCCTCATGAACCCACCTGTGTGAATAACCATCTTGTTAGTAGAAAGCTATTG ACTAGAGTCCATAGCTCTCCAAGTCTATGCAATCTGAACTCCCCCCACCACCAAAGCAATAACCTGAACAATCATCATCTTTATCAGCACCATCACCATT ACTATCCACACAACCAGCAACACCATCCTCATGGTCACCAACCTTCAAGACCACCTCATGAACCTAACAGGCTATCACCATCATCACTGGGACGACCTGA TTTTGGGAGAGCTCCTACTGGTATTGGCCTCCATCAATACTACTTCAGTAGACACAATTTTGGGGGTGGAAACTCCAGCAAAAAAGGGCACTAA
AA sequence Show only first row Show all	>Potri.003G006200.7 pacid=42786694 polypeptide=Potri.003G006200.7.p locus=Potri.003G006200 ID=Potri.003G006200.7.v4.1 annot-version=v4.1 MAEEAGSTASSPRNRVKFLCSYGGNILPRAVDGHLKYIGGETRVIAIPRDITFSEFTKKLSAEFEGDMVLKYQVIPEELDVLVSVKSDEDLKHMLDEYDR HESAGTPKFRAFLFPSNPAAIEKTTPMDPCAPEQRYLDSINGMVRTTANFKLPPINANWSSSSVSASSSPKCTSPEGNTFDSAPHEPTCVNNHLVSRKLL TRVHSSPSLCNLNSPHHQSNNLNNHHLYQHHHHYYPHNQQHHPHGHQPSRPPHEPNRLSPSSLGRPDFGRAPTGIGLHQYYFSRHNFGGGNSSKKGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Potri.003G006200 [exp]	0	1
AT3G26070			Plastid-lipid associated prote...		Potri.003G020700 [exp]	6.85	0.9338
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Potri.003G036900 [exp]	22.18	0.9172
AT4G31390			Protein kinase superfamily pro...		Potri.006G275600 [exp]	26.68	0.9178
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	29.84	0.9236
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.014G031100 [exp]	46.63	0.9042
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.005G164700 [exp]	47.74	0.9118	CRY1.1
					Potri.011G080900 [exp]	49.47	0.9135
AT1G52855			unknown protein		Potri.001G405400 [exp]	50.91	0.8981
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	71.27	0.9073
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	74.49	0.9005

Compare expression of checked genes

Potri.003G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.