Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HSC70.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24280 1111 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 1107 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G09590 636 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 609 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G28540 504 / 1e-170 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 502 / 1e-169 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 497 / 8e-168 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 495 / 4e-167 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 489 / 4e-165 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 483 / 1e-162 HSP70B heat shock protein 70B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224400 [exp] 1246 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.009G079700 [exp] 651 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 548 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G087500 [exp] 507 / 8e-172 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 506 / 2e-171 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042700 [exp] 498 / 3e-168 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.012G017600 [exp] 498 / 6e-168 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 496 / 1e-167 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 494 / 5e-167 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017566 [exp] 1155 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10039044 [exp] 1143 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10035781 [exp] 1133 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10037357 [exp] 1130 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10010496 [exp] 1124 / 0 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10027341 [exp] 1012 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10009039 [exp] 642 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 639 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 632 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 602 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.003G006300.1 pacid=42787093 polypeptide=Potri.003G006300.1.p locus=Potri.003G006300 ID=Potri.003G006300.1.v4.1 annot-version=v4.1 ATGGCTTCTTCAACTGCCCAGATTCACGTTCTTGGCGGCGGCGGCGGAATTGGTGGAACATCTTCGATAAAACCCAGGTTTTCTTTTGCGCCAAGATCAT CAGTATTCTTTGGTCAGAACCTTAGAGGAACCACAGCTACTTCCTTAAAACATACAAATAATACTTCAAGAAGAAGGTATAGTACAGGCCCCGTTAGGGT AGTGAATGAGAAAGTAGTTGGGATTGATCTGGGGACCACCAATTCGGCGGTGGCGGCGATGGAAGGAGGGAAACCCACGATAGTTACAAACGCGGAGGGG CAGAGGACTACGCCATCGGTTGTGGCGTATACAAAAAATGGGGATAGGCTCGTGGGGCAGATTGCAAAAAGGCAGGCGGTGGTGAACCCGGAAAACACCT TCTTTTCGGTGAAGAGGTTTATTGGGAGGAAGATGAGTGAAGTAGATGAGGAGTCTAAACAAGTTTCGTATAGGGTTGTGAGGGATGAGAATGGAAATGT GAAATTGGAGTGTCCTGCTATTGGGAAACAGTTTGCTGCTGAGGAGATTTCAGCTCAGGTTTTGAGAAAGCTTGTGGATGATGCTTCAAAGTTTTTGAAT GACAAAGTGACCAAAGCAGTTGTTACCGTGCCTGCTTACTTCAACGATTCCCAAAGGACAGCAACAAAGGATGCTGGCCGCATTGCTGGCCTGGAGGTTC TTCGAATCATCAATGAACCGACTGCTGCATCATTAGCATATGGATTTGAAAGGAAGAACAATGAAACCATTCTAGTATTTGACCTTGGTGGTGGTACTTT TGATGTTTCAGTGCTGGAGGTTGGTGATGGAGTCTTCGAAGTGCTTTCTACTTCAGGAGATACACATTTGGGTGGTGATGATTTTGACAAGAGAGTTGTT GATTGGCTTGCTGGTGACTTTAAGAGAGATGAAGGTATTGATCTCTTGAAAGATAAACAAGCACTTCAGCGGCTAACTGAGACAGCTGAGAAAGCTAAGA TGGAGCTGTCTTCTTTGACTCAGACAAACATCAGTTTGCCTTTCATCACTGCTACTGCAGATGGCCCCAAGCACATTGAGACCACCCTGACAAGGGCCAA GTTTGAGGAGTTATGCTCTGATCTGCTTGACAGGCTTAAAACCCCAGTTGAGAACTCCTTGAGGGATGCCAAACTGTCCTTTAAGGATCTAGATGAAGTG ATCCTTGTCGGTGGATCAACACGAATTCCAGCTGTACAGGGGCTTGTAAAGAAGTTGACCGGGAAGGACCCCAATGTCACTGTCAATCCAGATGAAGTTG TTGCCCTAGGTGCTGCAGTTCAGGCTGGTGTCTTGTCTGGAGATGTCAGTGACATTGTGCTGCTGGATGTGACTCCATTATCTATTGGTCTGGAAACTCT AGGAGGTGTTATGACAAAAATCATCCCAAGAAACACCACTCTTCCAACCTCCAAGTCAGAGGTGTTCTCAACTGCTGCTGATGGACAGACTAGTGTAGAA ATCAATGTTCTCCAGGGTGAAAGAGAGTTTGTGAGGGACAACAAATCTCTTGGCAGCTTCCGCCTGGATGGTATCCCACCAGCTCCGAGAGGGGTTCCTC AGATTGAAGTGAAGTTCGACATTGATGCCAATGGTATTCTCTCCGTCACTGCCATCGACAAAGGCACAGGGAAGAAGCAAGACATCACCATTACTGGTGC TAGCACCTTACCTAGTGATGAGGTTGAGAGGATGGTCAGCGAAGCTGATAAGTTTGCAAAGGAAGACAAGGAGAAGAGAGATGCCATTGACACAAAGAAC CAGGCAGATTCTGTTGTCTACCAGACTGAGAAGCAGCTTAAGGAGCTAGGGGAGAAGGTTCCAGCCCCTGTCAAAGAGAAGGTTGAGGCAAAGCTCCAAG AGCTCAAGGATGCAATTGCAGGTGGATCAACTCAAGTGATGAAAGATGCCATGACTGCCCTCAATCAAGAAGTCATGCAACTTGGCCAATCCCTTTACAA CCAACCAGGTGCAGCGCCCGGTGCCGGCCCTGCCCCTGGCGGTGAAGCTGGACCCACAGATTCATCAAGCAAGGGACCTGATGGAGATGTCATTGATGCA GATTTCACAGACAGCAAATGA
AA sequence Show only first row Show all	>Potri.003G006300.1 pacid=42787093 polypeptide=Potri.003G006300.1.p locus=Potri.003G006300 ID=Potri.003G006300.1.v4.1 annot-version=v4.1 MASSTAQIHVLGGGGGIGGTSSIKPRFSFAPRSSVFFGQNLRGTTATSLKHTNNTSRRRYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEG QRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLN DKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV DWLAGDFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEV ILVGGSTRIPAVQGLVKKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVE INVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVERMVSEADKFAKEDKEKRDAIDTKN QADSVVYQTEKQLKELGEKVPAPVKEKVEAKLQELKDAIAGGSTQVMKDAMTALNQEVMQLGQSLYNQPGAAPGAGPAPGGEAGPTDSSSKGPDGDVIDA DFTDSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.003G006300 [exp]	0	1	HSC70.2
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.009G009300 [exp]	1.00	0.9461	SLP.1
AT2G43630			unknown protein		Potri.006G123800 [exp]	1.41	0.9391
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.001G002500 [exp]	1.73	0.9374
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	4.47	0.8982
					Potri.010G111100 [exp]	5.19	0.8606
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	6.92	0.8876	Pt-HSC70.1
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.001G399500 [exp]	9.48	0.8444
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	14.69	0.8514	Pt-LEN1.1
AT2G01220			Nucleotidylyl transferase supe...		Potri.010G120200 [exp]	15.87	0.8064
AT4G25310			2-oxoglutarate (2OG) and Fe(II...		Potri.002G086550 [exp]	16.49	0.8052

Compare expression of checked genes

Potri.003G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.