Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16610 687 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 535 / 3e-179 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 536 / 1e-178 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 533 / 2e-178 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 534 / 4e-178 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 530 / 6e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 530 / 1e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 520 / 6e-173 unknown protein AT4G30700 512 / 8e-171 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 511 / 1e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 584 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 575 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 564 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 554 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 553 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 547 / 0 AT3G22690 582 / 0.0 unknown protein Potri.005G215500 [exp] 546 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 546 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 545 / 0 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035788 [exp] 1019 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10037362 [exp] 675 / 0 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 571 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 550 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 547 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 535 / 2e-179 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 531 / 7e-178 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 536 / 1e-177 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 534 / 5e-177 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 527 / 4e-175 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G006800.1 pacid=42786582 polypeptide=Potri.003G006800.1.p locus=Potri.003G006800 ID=Potri.003G006800.1.v4.1 annot-version=v4.1 ATGCAACTGAGAACGCGCCTAAGCCTTGAATATTGCACAGTCCTCCTGGAATCTTGCATTCAATCAAAATCTCTGTTTCGAGGCAAGCTGATCCATCAGC ATCTGCTCAAATGCCTACACAGAACCCACGAAACCAATCTTACAAATTTTGATGTGCCATTCGAAAAACTCGTTGATTTATATATAGCTTGCAGTGAACT CAAAATCGCACGCCATGTGTTTGATAAAATGCCCCATAGACCCAAAAATGTTGTTTTATGGAATTTATTGATAAGAGCTTATGCTTGGAATGGTCCCTAT GAAGAAGCCATTGATTTGTACTATAAAATGTTGGGTTATGGTATCACACCCAACAGGTTCACCTTCCCTTTTGTTCTCAAAGCGTGTTCGGCTCTAAAAG AAGCAAGTGAAGGAAGAGAGATTCATTGTGACATCAAAAGACTTCGTCTTGAATCTAATGTCTATGTTTCCACCGCTTTGGTTGATTTTTATGCTAAATG TGGGTGTTTGGATGATGCAAAAGAAGTGTTTGATAAAATGCATAAAAGGGATGTTGTTGCGTGGAATTCGATGATTTCAGGGTTTTCTTTACATGAGGGT TCCTATGATGAGGTCGCACGACTGCTTGTTCAAATGCAAAATGATGTGAGTCCTAATTCATCAACAATTGTTGGTGTCCTTCCTGCTGTCGCTCAAGTGA ATTCATTGAGACATGGAAAGGAAATTCATGGGTTTTGTGTTAGGAGGGGCTTCGTTGGCGATGTGGTGGTAGGAACTGGGATTTTGGACGTGTACGGGAA ATGTCAGTGCATAGATTATGCCAGGAGAATTTTTGACATGATGGGTATTGTCAAGAATGAGGTGACTTGGAGTGCTATGGTCGGTGCATATGTTGTGTGT GATTTTATGAGGGAGGCATTGGAACTATTTTGTCAGTTGTTGATGCTCAAGGATGATGTAATTGTTCTGTCAGCGGTAACTCTTGCCACTGTTATTCGAG TTTGTGCAAATTTAACTGATTTAAGCACGGGAACTTGCTTGCATTGTTACGCGATAAAATCAGGATTTGTTTTGGATTTGATGGTTGGAAATACTTTACT TTCAATGTATGCCAAGTGTGGGATTATCAATGGTGCAATGAGGTTTTTTAATGAAATGGATTTAAGAGATGCAGTTTCGTTCACTGCTATCATTTCAGGC TATGTTCAAAATGGTAATTCTGAAGAGGGTTTGCGCATGTTCCTCGAGATGCAGTTGTCTGGGATAAATCCAGAAAAGGCAACCCTGGCTAGTGTTCTGC CAGCTTGTGCTCATTTGGCTGGTTTACATTATGGGTCTTGCAGCCATTGCTATGCAATCATTTGCGGATTTACAGCCGATACCATGATTTGTAATGCTCT TATTGATATGTACGCAAAATGTGGGAAGATTGACACTGCTAGGAAAGTATTTGACAGGATGCATAAGCGGGGTATTGTGTCATGGAATACCATGATAATT GCTTATGGTATTCATGGGATTGGATTGGAAGCACTATTGTTGTTTGACAACATGCAGTCTGAAGGTTTAAAACCAGATGATGTGACTTTCATTTGTCTCA TATCTGCTTGCAGCCATTCGGGACTTGTTGCAGAAGGCAAATACTGGTTTAATGCCATGACTCAAGATTTTGGAATCATCCCCAGAATGGAGCATTATGC ATGCATGGTTGATCTTCTAAGCAGGGCTGGGCTTTTCAAAGAGGTGCACAGTTTCATTGAAAAGATGCCACTTGAGCCTGATGTTCGTGTATGGGGTGCC CTGCTTTCTGCTTGTCGAGTCTATAAGAATGTTGAACTAGGGGAAGGAGTGTCAAAGAAAATTCAGAAGCTAGGACCTGAAAGTACTGGGAACTTTGTTC TCCTATCCAATATGTATAGTGCTGTTGGGAGATGGGACGATGCAGCACAGGTTAGGTTCACACAGAAGGAACAGGGTTTTGAGAAAAGTCCTGGATGCAG CTGGATTGAGATAAGTGGGGTTGTCCATACATTTCTTGGTGGTGGATATAGGTCCCACCCACAGCTGACACAAATAAGCAACAAACTTGATGAACTACTG GTGGAGATGAAAAGGTTGGGTTACCAAGCAGAATCTAGCTATGTCTTCCAAGATGTCGAGGAAGAGGAGAAGGAACGAGTCCTTCTTTATCACAGCGAGA AACTAGCTATTGCATTTGGAATTCTTAGTTTGAGCCCCGACAAGCACATCATAGTAACTAAGAATTTGCGAGTTTGTGGTGATTGCCACACTGCTATTAA ATTTATTTCTTTGGTAACTAAGAGAGACATAACAGTAAGAGATGCAAGTCGATTTCATCATTTCAAAGACGGAATTTGCAATTGTGGAGATTTCTGGTAA
AA sequence Show only first row Show all	>Potri.003G006800.1 pacid=42786582 polypeptide=Potri.003G006800.1.p locus=Potri.003G006800 ID=Potri.003G006800.1.v4.1 annot-version=v4.1 MQLRTRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPY EEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEG SYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVC DFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISG YVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMII AYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGA LLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELL VEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	0	1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	2.23	0.8925
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	3.87	0.8573
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	8.60	0.8639
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	8.94	0.8232
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	9.48	0.8530
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Potri.015G003000 [exp]	10.95	0.8585
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	11.61	0.8385
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	12.00	0.8383
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	12.48	0.8388
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	12.64	0.8096

Compare expression of checked genes

Potri.003G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.