Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	IFS1.39
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 525 / 0 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 516 / 1e-180 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 515 / 3e-180 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 515 / 4e-180 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT2G23190 509 / 2e-177 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37320 506 / 1e-176 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37430 499 / 7e-174 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37400 489 / 6e-170 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT5G57220 488 / 2e-169 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT5G36220 488 / 2e-169 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008200 [exp] 969 / 0 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 961 / 0 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 705 / 0 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 617 / 0 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143900 [exp] 617 / 0 AT4G37370 511 / 5e-179 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G115500 [exp] 608 / 0 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G205200 [exp] 599 / 0 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 583 / 0 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.007G049900 [exp] 581 / 0 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020437 [exp] 549 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 504 / 1e-175 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 498 / 3e-173 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024816 [exp] 484 / 2e-167 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 454 / 9e-156 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10027614 [exp] 445 / 2e-153 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 442 / 3e-151 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 436 / 1e-148 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018711 [exp] 421 / 8e-143 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024078 [exp] 400 / 2e-134 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G007000.1 pacid=42786769 polypeptide=Potri.003G007000.1.p locus=Potri.003G007000 ID=Potri.003G007000.1.v4.1 annot-version=v4.1 ATGGAAGAAGACTACAGTGCCTCGCTATGGCTACGCTATTCCTTTCTCCTTCCATGCATGGTGTTTCTTGTTCTTTCAACGAAGTTCTTGCTCCACAAAA GAAAGCAAGGCAAGATCAATCATCTCCCACCAAGCCCTTTTGCTCTTCCAATTATAGGCCATCTCTATCTCCTCAAGCAACCTATCCATCGAACACTCCA CTCCCTCTCAAAAAAATACGGTCCGATATTTTCTATCAAGCTCGGATCCCGCCTTGCCGTTGTCATATCTTCACCATCGGCCGTGGAAGAATGTTTCACC AAGAACGATATTGTCTTGGCCAACCGTCCTTACTTCTTGAGCAGCAAGTACTTAAACTACAACAACACCACAATGGGCTCAGTCGAATACGGAGAACATT GGCGCAACCTTCGCCGCATAAGCGCTCTTGAAATCTTCTCCCCTCCTCGCCTCACTTCGTTATTTAGCATCCGAAGAGAGGAAGTCATGGCCTTACTGCG TAGACTTCACGGTGTTTCCAAGCATGGTAACTATGCTAAAGTGGAGTTAAGGTCCATGCTCTTGGACCTAACGAGTAATATTATAATGAGAATGGTTGCA GGGAAGAGGTATTATGGAGAAGATGTTAAGGAAATTGAAGAGGCTAGGATTTTTAAGGAGATCATGGAAGAGTTTGCCGAATGTATTGCCGTGAGAAATT TGGGGGATATGATTCCATTGTTGCAGTGGATTGATTTTACTGGGCACTTGAAGAAGTTGGATAGACTAAGTAAGAAGATGGATGTGTTCTTACAAGGACT GGTTGATGAGCATCGAGATGACAGGGACAGAAACACTATGATAAACCGGTTTCTTGCTCTGCAAGAAGAACAGCCTGAATACTACACGGATGAAGTAATC AAAGGCCATGTTCTGGTGTTGTTGATTGGGGGAACAGAGACTGCTGCTACATCTATGGAATGGGCATTAGCCAATCTACTCAACCATCCAAACGTGCTAA AGAAAGCTAAAGCAGAACTGGACGCTCAAGTTGGAGACCGCTTGATAGATGAGTCAGATTTTGCAAAACTACATTACCTTCAGAGCATCATCTCCGAGAA TCTGCGTCTATGTCCGGTGACACCCCTTATACCACCGCACATGCCATCCTCCGACTGTACCATTGGAGGATACCATGTCCCAGCTGGGACCATATTATTT GTAAACGCATGGTCTCTCCATAGAGACCCTACACTGTGGGATGAGCCCACGAGTTTCAAGCCTGAGAGATTTGAATCTGCAGGCAGAGTTGATGCATGCA AGTTCATCCCCTTTGGGATGGGAAGGAGAGCTTGTCCTGGAGATGGCCTAGCAAACAGAGTGATGACCTTAACTTTGGGATCGTTGATACAGTGCTTTGA GTGGGAAAGGGTTGGTGAAAACAAGATTGACATGACAGAGAAGACAGCAATGACCATGTTCAAAGTTGAGCCCTTAGAGCTCATGTGCAGAGCTCGCCCG ATTCTAGACATGCTTCTCTCTTTAAGTGGTCAAAAAATATAA
AA sequence Show only first row Show all	>Potri.003G007000.1 pacid=42786769 polypeptide=Potri.003G007000.1.p locus=Potri.003G007000 ID=Potri.003G007000.1.v4.1 annot-version=v4.1 MEEDYSASLWLRYSFLLPCMVFLVLSTKFLLHKRKQGKINHLPPSPFALPIIGHLYLLKQPIHRTLHSLSKKYGPIFSIKLGSRLAVVISSPSAVEECFT KNDIVLANRPYFLSSKYLNYNNTTMGSVEYGEHWRNLRRISALEIFSPPRLTSLFSIRREEVMALLRRLHGVSKHGNYAKVELRSMLLDLTSNIIMRMVA GKRYYGEDVKEIEEARIFKEIMEEFAECIAVRNLGDMIPLLQWIDFTGHLKKLDRLSKKMDVFLQGLVDEHRDDRDRNTMINRFLALQEEQPEYYTDEVI KGHVLVLLIGGTETAATSMEWALANLLNHPNVLKKAKAELDAQVGDRLIDESDFAKLHYLQSIISENLRLCPVTPLIPPHMPSSDCTIGGYHVPAGTILF VNAWSLHRDPTLWDEPTSFKPERFESAGRVDACKFIPFGMGRRACPGDGLANRVMTLTLGSLIQCFEWERVGENKIDMTEKTAMTMFKVEPLELMCRARP ILDMLLSLSGQKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007000 [exp]	0	1	IFS1.39
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.013G161100 [exp]	1.73	0.9557
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	2.82	0.9597
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	5.47	0.9562
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G002900 [exp]	7.48	0.9515
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.018G000900 [exp]	7.74	0.9386
					Potri.003G020701 [exp]	7.87	0.9231
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048500 [exp]	8.36	0.9486
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	8.48	0.9491
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.012G089600 [exp]	8.71	0.9313
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G261700 [exp]	10.00	0.9311

Compare expression of checked genes

Potri.003G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.