Plant FIBer expression Database

Potri.003G008300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61580 626 / 0 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
AT1G43170 621 / 0 RPL3A, ARP1, EMB2207 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G194500
[exp]
646 / 0 AT1G43170 686 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Potri.002G066200
[exp]
643 / 0 AT1G43170 701 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041041
[exp]
627 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
Lus10006181
[exp]
625 / 0 AT1G43170 679 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Lus10035786
[exp]
625 / 0 AT1G61580 683 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Lus10037360
[exp]
541 / 0 AT1G61580 612 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF00297 Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence
>Potri.003G008300.4 pacid=42787124 polypeptide=Potri.003G008300.4.p locus=Potri.003G008300 ID=Potri.003G008300.4.v4.1 annot-version=v4.1
ATGATTTCTAATTTATTGTTGTTGACAGAGTGGTATTTGCATTTATCAAGGTTGGCTAACTTATTTGTATCAACTTGCATTCTCTGTATATTGAATTTTG
TTGTCTTTGATGATGTTACAGCAAAATCCTTTCCCAAGGATGATCCAACAAAACCTTGCAGATTGACTGCTTTCCTAGGTTACAAAGCTGGGATGACTCA
TATTGTCCGAGAAGTTGAAAAGCCAGGCTCAAAGCTCCACAAGAAAGAAACATGTGAAGCTGTTACAATCATAGAAACACCGCCAATGGTTGTTGTTGGG
GTTGTTGGCTATGTCAATACTCCTGGTGGTCTCCGATCTCTGAGCACTGTATGGGCCCAGCATTTGAGTGAGGAGGTCAGAAGGAGATTCTACAAAAACT
GGTGCAAGTCAAAGAAGAAGGCTTTCACAAAGTACTGTAAGAAGTACGAGTCTGAGGATGGGAAAAAGGACATTCAGGCTCAATTGGAGAAACTGAAAAA
GTATTGCACTGTGATTCGTGTGTTGGCGCATACCCAGATTCGGAAAATGAAGGGACTGAAACAGAAGAAGGCCCATTTGATGGAGATCCAGGTCAACGGC
GGGGATGTTGCCAAGAAGGTTGACTTTGCTTACAGTTTCTTTGAGAAGCAGATTCCTATTGATGCTATTTTCCAGAAAGATGAAATGATTGACATTATTG
GTGTAACCAAGGGAAAGGGCTATGAAGGTGTGGTCACTCGTTGGGGTGTGACTCGACTCCCTCGCAAGACTCATCGTGGTCTTCGCAAGGTAGCTTGTAT
TGGTGCATGGCATCCAGCTAGGGTCTCATTTACTGTTGCCAGGGCTGGGCAGAATGGTTACCATCACCGCACGGAGCTGAACAAGAAAATTTACAAGCTT
GGAAAGTGTGGTCAAGAGTCTCATTGTGCAGTTACTGAATATGACAGGACTGAAAAGGACATTACACCAATTGGAGGATTCCCTCATTATGGTGTTGTGA
AGGAAGATTATTTGATGATAAAAGGATGCTGTGTGGGCCCCAAGAAACGTGTGGTAACACTGAGACAGTCTCTGTTGAAGCAGACATCTAGAGTTGCTAT
GGAGGAGATTAAACTCAAGTTCATTGATACATCCTCCAAATTTGGCCATGGACGATTCCAGACCACTGAGGAAAAGGCCAAGTTTTACGGGCGGCTCAAG
ACTTGA
AA sequence
>Potri.003G008300.4 pacid=42787124 polypeptide=Potri.003G008300.4.p locus=Potri.003G008300 ID=Potri.003G008300.4.v4.1 annot-version=v4.1
MISNLLLLTEWYLHLSRLANLFVSTCILCILNFVVFDDVTAKSFPKDDPTKPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMVVVG
VVGYVNTPGGLRSLSTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYCKKYESEDGKKDIQAQLEKLKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNG
GDVAKKVDFAYSFFEKQIPIDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKL
GKCGQESHCAVTEYDRTEKDITPIGGFPHYGVVKEDYLMIKGCCVGPKKRVVTLRQSLLKQTSRVAMEEIKLKFIDTSSKFGHGRFQTTEEKAKFYGRLK
T

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61580 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN ... Potri.003G008300
[exp]
0 1
AT4G17180 O-Glycosyl hydrolases family 1... Potri.006G002100
[exp]
6.00 0.7874
AT5G11340 Acyl-CoA N-acyltransferases (N... Potri.006G248900
[exp]
7.34 0.8253
Potri.019G045532
[exp]
9.16 0.7853
AT3G06040 Ribosomal protein L12/ ATP-dep... Potri.015G077200
[exp]
10.39 0.7830
AT3G58610 ketol-acid reductoisomerase (.... Potri.011G052700
[exp]
11.48 0.7966
AT2G29950 ELF4-L1 ELF4-like 1 (.1) Potri.001G251600
[exp]
14.59 0.8067
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.004G042500
[exp]
15.87 0.7712
AT4G25315 Expressed protein (.1.2) Potri.004G189300
[exp]
16.24 0.7731
AT2G20060 Ribosomal protein L4/L1 family... Potri.004G004800
[exp]
18.00 0.7654
AT1G08125 S-adenosyl-L-methionine-depend... Potri.009G006800
[exp]
22.62 0.7847

Potri.003G008300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.