Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09810 345 / 4e-113 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT1G79270 296 / 3e-93 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G13460 276 / 4e-84 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT3G13060 274 / 1e-83 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G48110 271 / 9e-83 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G55500 266 / 1e-81 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT3G17330 265 / 1e-81 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G58190 255 / 1e-77 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT5G61020 254 / 1e-77 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G03950 247 / 1e-75 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G223800 [exp] 1000 / 0 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.008G080800 [exp] 356 / 2e-115 AT1G79270 424 / 2e-142 evolutionarily conserved C-terminal region 8 (.1) Potri.010G175500 [exp] 341 / 1e-109 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.014G001000 [exp] 275 / 6e-84 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.019G034300 [exp] 271 / 2e-83 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.008G100200 [exp] 275 / 4e-83 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.010G152300 [exp] 275 / 8e-83 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.007G002800 [exp] 270 / 5e-82 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.003G222700 [exp] 268 / 1e-81 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037365 [exp] 608 / 0 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10035790 [exp] 608 / 0 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037364 [exp] 548 / 0 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 274 / 6e-83 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10027582 [exp] 265 / 1e-80 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10018343 [exp] 266 / 3e-80 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10002624 [exp] 264 / 3e-80 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10034792 [exp] 263 / 1e-79 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 262 / 7e-79 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10020269 [exp] 263 / 1e-78 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G008400.1 pacid=42784972 polypeptide=Potri.003G008400.1.p locus=Potri.003G008400 ID=Potri.003G008400.1.v4.1 annot-version=v4.1 ATGGCCACCGAAACCAAACTTGACCAACGATTGGAGTCGAGCCCTGTTGTTGCTAAGCCAGTTGACAACAATGTGGGTTCTGGAATAGATGGACTCCCTT CAGATTCGACTCCCACCATTTCGGCTTCTGGGAATGGTGTTTCTGACACCAAAGTTAATGGCAGTGCGGTATCTATCACCAAAAGGGAGGCTGATCAAGA GCCAAATGCTGCTAGTAGTTATAGTTATCAATACCCAGGCTACAGTGGGTCCTCCACGCAATTGGATGATCAAGTTTATTACCAAGCAGATGGTTCCCAA ACAGGCATGCAATCGGATAATGGTTCAATGGTTTATTATTGGCCTAGCTATCCATATGCTTCAGGAACGGTAGTTGGTGTTGATGGGCAAAGTGTTGCTC AACAGCCATATTTTTCTTCCTCGGGATATCTACAGCATCCTGTGTCCTATGGGTTAGAAGCCATGCCTTGTTATTCATGGGATTCAGCATATGTCGGTGA TGTCTCGAATGGAAATGCTGTTTTTGAAAACGGAAAAGGTGGCTCAGGTTCCACTGCGTTTGCCCAGTCAAATGGCTTCAACTCTACAAAATCTAATGGC AACATTGGCAGCAAAATTTCCAAGCCTATGTACACTCAACTTGTCAGACCTATGACCAAGGTTTCTCCATCGGGTTCAGATTTTTCAGCAGGCCTTTTTA AGGGATACCAACCTATGGGAAAGTTTCCTCCATTTACTTCCCAAAAACCAGGTCCATTCCCACACAATGGTCCATTGAACTACAGGCAAAATGGAAGAAT GTGGACTGGGAATTACAGAAACATATCAAGAGACAGATTCAATAAAAATTATGATTTTGAAAACCAAACTGAATTAACTCGTGGTCCTAGGGCATCCAAC AAAAATGCTCCATTGGATTTGTTGGTCAACAAAAATGCTTCGTTGGACTCCTCAGTAAAGGACGAGTTGGGAATTGCAATGCGCAAAGAGCAATATAACT TACCAGATTTTGAAACCGAGTATGCTAATGCCAAGTTTTTTGTTATCAAATCTTATAGTGAAGATGACATTCACAAGAGCATTAAATATGATGTATGGGC AAGTACCCCAAATGGCAATAAGAAGCTAGATGCTGCATTCCACAATGCAGAAGAGGTTTCAAGTGATACCGGGTACAAATGTCCAATTTTCCTCTTTTTT TCAGTAAATGGAAGTGGACAGTTTGTTGGCTTTGCTGAGATGGTTGGTCAGGTTGACTTTAACAAAGACATGGATTTTTGGCAAATTGACAAATGGAACG GTTTTTTCCCTGTGAAGTGGCATGTAGTAAAAGACATTCCTAATGGTCATCTGCGGCATATTGTGCTTGAAAATAATGATGGACATTCTGTAACTTTCAG CCGGGACACTCAAGAGATTGTACTCAAGCAAGGTTTGGAAATGCTTAATATTTTCAAGAGTTATTCTGCAAAAACATCTTTGTTAGATGACTTCAACTTC TATGAAAAGCGAGAGAAATCTCTTAACACCAAAAAGGGCAACAAGCCTGCTACTTTGCAAATGGAAATATTTAAGAACGGTGATTTCGCTAAGCATACAA CAGCCGAAGAAGGGATATCTGAAGATGACTCAAGGACCAAGAAAACTACTAATCCCTCATCTCTTATCAATTTAACTAAAAATCTCTCACTCAGTGGTCA CATCCAGAAGAGTAACCCTATAAAGAAGCCAATAGGAAATTCAGATCCACCTGTTCCTTCACCATAG
AA sequence Show only first row Show all	>Potri.003G008400.1 pacid=42784972 polypeptide=Potri.003G008400.1.p locus=Potri.003G008400 ID=Potri.003G008400.1.v4.1 annot-version=v4.1 MATETKLDQRLESSPVVAKPVDNNVGSGIDGLPSDSTPTISASGNGVSDTKVNGSAVSITKREADQEPNAASSYSYQYPGYSGSSTQLDDQVYYQADGSQ TGMQSDNGSMVYYWPSYPYASGTVVGVDGQSVAQQPYFSSSGYLQHPVSYGLEAMPCYSWDSAYVGDVSNGNAVFENGKGGSGSTAFAQSNGFNSTKSNG NIGSKISKPMYTQLVRPMTKVSPSGSDFSAGLFKGYQPMGKFPPFTSQKPGPFPHNGPLNYRQNGRMWTGNYRNISRDRFNKNYDFENQTELTRGPRASN KNAPLDLLVNKNASLDSSVKDELGIAMRKEQYNLPDFETEYANAKFFVIKSYSEDDIHKSIKYDVWASTPNGNKKLDAAFHNAEEVSSDTGYKCPIFLFF SVNGSGQFVGFAEMVGQVDFNKDMDFWQIDKWNGFFPVKWHVVKDIPNGHLRHIVLENNDGHSVTFSRDTQEIVLKQGLEMLNIFKSYSAKTSLLDDFNF YEKREKSLNTKKGNKPATLQMEIFKNGDFAKHTTAEEGISEDDSRTKKTTNPSSLINLTKNLSLSGHIQKSNPIKKPIGNSDPPVPSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	0	1
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	1.00	0.7559
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Potri.001G145300 [exp]	2.44	0.7532
AT1G51610			Cation efflux family protein (...		Potri.010G251300 [exp]	2.44	0.7258
AT1G31460			unknown protein		Potri.001G128600 [exp]	5.91	0.6864
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	9.53	0.6798
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	13.78	0.6295
AT5G58530			Glutaredoxin family protein (....		Potri.008G072200 [exp]	13.78	0.6520
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	17.66	0.6848
AT3G26935			DHHC-type zinc finger family p...		Potri.015G101900 [exp]	22.62	0.6365
AT4G33400			Vacuolar import/degradation, V...		Potri.014G029600 [exp]	23.74	0.6957

Compare expression of checked genes

Potri.003G008400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.