Plant FIBer expression Database

Potri.003G008500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09800 458 / 6e-162 Pseudouridine synthase family protein (.1)
AT3G06950 82 / 3e-17 Pseudouridine synthase family protein (.1)
AT5G35400 55 / 4e-08 Pseudouridine synthase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G206200
[exp]
74 / 1e-14 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1)
Potri.018G147400
[exp]
54 / 6e-08 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2)
Potri.002G061650
[exp]
44 / 9e-05 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037366
[exp]
483 / 5e-172 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1)
Lus10035791
[exp]
430 / 3e-151 AT1G09800 414 / 7e-145 Pseudouridine synthase family protein (.1)
Lus10039480
[exp]
72 / 1e-13 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1)
Lus10022949
[exp]
48 / 8e-06 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2)
Lus10027594
[exp]
44 / 0.0002 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2)
Lus10037367
[exp]
0 / 1 AT1G47840 97 / 9e-29 hexokinase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF01416 PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence
>Potri.003G008500.1 pacid=42785269 polypeptide=Potri.003G008500.1.p locus=Potri.003G008500 ID=Potri.003G008500.1.v4.1 annot-version=v4.1
ATGACAGAAGTAAACCCAAAAGCCTCACCTGAAGAATCTCCGAACGAAAGACCTTCAAAGATCTCTAAAACCCTTCAAGAAGAAGGAGACTCGAGCGAGG
AAGAAGAAGAAAAAGAAGCTGTAGATAAATCAATGAAGCCAGGACTTCAACGTTACTTGGTAGCTGTTGAGTACATAGGCACTCGATTCTGTGGCTCCCA
GCAACAGCTTAATCATAGAACTGTTGTTGGTGTCCTTCAGGAGGCATTTCATAAATTCATTGGGCAGCCTGTAACAATCTGTCTATCCAGCAGGACTGAT
GCAGGAGTACATGCATTGTCTAATGTTTGCCATGTTGATGTGGAACGCATAAGCAAAAGGAAGCCAGGTGAAGTGTTACCGCCTCACGAACCAGCAGTAG
TCAGAAAAGCCGTGAACCATTTCCTGCAGAAGGAAGGTGATATTATGGTGACTGATGTTCGAAGTGTTTCGGCTCATTTCCATGCGAGATTCAAAGCTCA
AGAGCGCACGTACTTCTACCGCTTGCTGATTGGACCAGAGCTTTTGTCCACCTTTGAAAAAGACCGGGCATGGCATGTATCAGAGGAGTTAGATCTTGTT
TCCATGCAGGAAGCTTGCAAAGTTCTTGTTGGACATCATGATTTTAGTTCCTTCCGGGCATCTGGTTGTCAGGCAAAATCACCATTCAGAACCTTAGAAG
AACTTTCTGTTTTGGAGGTGGTTTCAACTCCATATTTTCCATCCATCACAGAAAGAGAACAGAACAGTTCAAACGGGGAAGGTCCTCATTCATTCCATAA
CAAGTGTAAGACTGGCTTACCAACTGGATCTATTTCCAATGGTTTTTTGGCAGGGGGCTCCAATAGTGGAACTGATTTAGGTTTTGGGATAAGGAGAAGG
CATCGCTGCTATGTCATAACAGCTCGTTCTCGCTCTTTTCTCTACCACCAGGTTAGACTGCTTGTTGGTGTTCTTAAATCTGTGGGCACTGGAGATCTAA
CAGTTTCAGATGTTGAAAGAATACTGAATGCCAGGTCTATTACTGCTGCAAGTCCTATGGCTCCTGCATGTGGTCTCTACCTCGGACATGTTAAGTATGA
GCCGCTGTGA
AA sequence
>Potri.003G008500.1 pacid=42785269 polypeptide=Potri.003G008500.1.p locus=Potri.003G008500 ID=Potri.003G008500.1.v4.1 annot-version=v4.1
MTEVNPKASPEESPNERPSKISKTLQEEGDSSEEEEEKEAVDKSMKPGLQRYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTD
AGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKEGDIMVTDVRSVSAHFHARFKAQERTYFYRLLIGPELLSTFEKDRAWHVSEELDLV
SMQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEVVSTPYFPSITEREQNSSNGEGPHSFHNKCKTGLPTGSISNGFLAGGSNSGTDLGFGIRRR
HRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLYLGHVKYEPL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09800 Pseudouridine synthase family ... Potri.003G008500
[exp]
0 1
AT5G04520 Protein of unknown function DU... Potri.010G233000
[exp]
2.23 0.8163
AT4G33990 EMB2758 embryo defective 2758, Tetratr... Potri.012G111900
[exp]
3.16 0.7822
AT1G60080 3'-5'-exoribonuclease family p... Potri.016G055600
[exp]
3.46 0.7935
AT2G37690 phosphoribosylaminoimidazole c... Potri.019G012300
[exp]
3.74 0.7952 Pt-PURE.2
AT3G23940 dehydratase family (.1.2) Potri.003G176600
[exp]
5.65 0.7862
AT4G14820 Pentatricopeptide repeat (PPR)... Potri.010G086200
[exp]
6.70 0.7406
AT5G04895 DEA(D/H)-box RNA helicase fami... Potri.010G246000
[exp]
8.77 0.7522
AT2G19490 recA DNA recombination family ... Potri.018G067900
[exp]
9.79 0.7005
AT5G26800 unknown protein Potri.005G011800
[exp]
12.72 0.7557
Potri.003G157401
[exp]
13.22 0.6970

Potri.003G008500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.